Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79250 625 / 0 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 623 / 0 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 575 / 0 RSH3 root hair specific 3 (.1) AT5G47750 503 / 2e-173 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G55910 485 / 1e-167 D6PK D6 protein kinase (.1) AT5G40030 478 / 5e-165 Protein kinase superfamily protein (.1) AT3G27580 475 / 2e-162 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT2G44830 480 / 6e-162 Protein kinase superfamily protein (.1) AT5G03640 439 / 3e-144 Protein kinase superfamily protein (.1) AT3G52890 429 / 2e-140 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042911 [exp] 496 / 7e-172 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10016629 [exp] 498 / 4e-171 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 497 / 5e-171 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 496 / 9e-171 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 475 / 7e-162 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10032185 [exp] 469 / 1e-160 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 468 / 3e-160 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 438 / 4e-146 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 434 / 1e-144 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175900 [exp] 655 / 0 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.008G080600 [exp] 650 / 0 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G003800 [exp] 517 / 1e-178 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 513 / 5e-177 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 510 / 3e-174 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 506 / 2e-172 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 492 / 4e-170 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 494 / 1e-168 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.009G146700 [exp] 443 / 2e-146 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 441 / 7e-146 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001840 pacid=23142381 polypeptide=Lus10001840 locus=Lus10001840.g ID=Lus10001840.BGIv1.0 annot-version=v1.0 ATGCAGAACAACAGTCAGCGTCTCCTACCGCCAGGCCCAGCAAGGTCGATGCCTCCCACCGGCACCAACCCACAATACCAATACCAGTACCAACAACAAC AGCAACAACAACAACAAATAACATCAGGAGGAGGAGGAGGTAATGGGATGAATACTAATACTAATATAACAAGTACAAGCACTACCAGTAGCACAAGCAG CAGCCGGAGCGACAGTATAGACAGCAGCTCCACCAACACAACAACTACCACTAACAATATTGCAGCACCCTTGAAACCCCACACTGGGGGAGACAGCAGG TGGGACTCAATCAACGCCATCAACTCCCGAGGCTCCCCAATGGGTTTAAGCAATTTTCGCCTCCTAAAGCGCCTCGGGTATGGTGACATCGGCAGTGTCT ACCTCGTCGAACTACGTGGCACGACCAGCTACTTTGCCATGAAGGTCATGGATAAGGCCTCATTAGCTAGCCGCAACAAGCTTCTCCGTGCACAGACAGA GCGGGAGATTTTGGGACTCCTTGACCACCCTTTCCTCCCTACCCTCTACTCCTATTTCGAGACAGATAAGTTTTACTGCCTAGTCATGGAGTTTTGCTCC GGAGGTAACCTCCACTCTCTCCGCCAGAAACAGCCTACAAAGTATTTCACCGAAGAAGCAGCTCGCTTCTTTGCATCAGAAGTCTTGTTAGCCCTTGAAT ACCTTCACATGCTTGGCATTGTGTACAGAGATCTTAAGCCTGAGAACGTCCTTGTCAGAGACGAAGGACACATTATGCTATCTGATTTCGACCTTTCCCT CCGTTGCTCGGTTAACCCTACTCTTGTCAAATCTTCCTCGGTCAGTGGAGGGGGAGGAGGAGGCGGGGGAGGAACTGGGGGTGGAGCTGTAGGTATTGTC GGCGGTGGAGCTTCAGGTGTGGCCCTTGGAAGCGGAGGAGGAGCAATTATCGACGAGGAGTTTGCAGTGCATGGTTGCATGCAACCGTCGACCTTCTTCC CAAGGATACTTCCAAGTAAGAAGAATAGAAAGTCAAAGTCAGATTTCGGATTGTTTGTGGGTGGATCCCTCCCAGAGCTGATGGCGGAGCCCACGAATGT GAGATCAATGTCGTTCGTCGGGACCCACGAATACTTGGCGCCGGAGATAATAAGAGGTGAAGGACACGGGAGCGCTGTGGACTGGTGGACATTTGGAATA TTCTTGTACGAGCTACTCCATGGGACGACGCCTTTCAAAGTGGGCCAGCCCCTTCGGTTCCCTGACAACCCACAGGTCAGCTATGCGGCACGAGACTTAA TAAGAGGACTCCTTGTTAAAGAGCCACACAAGCGGATCGCTTACAAGCGTGGGGCCACAGAAATCAAGCAACACCCATTTTTCGAAGGACTTAATTGGGC TCTTGTTCGGAGTCTAGCACCTCCCCATGTCCCCGATACTGTTGACTTCTCTCAATATGCCAGCAAAGAGCCACCTCCGTCCTCGTCTTCAGCCTCTGCT GTTGCGTCAGCACCACACCCTCCTTCTGCTCCTACGGCTGCATTAGGGGACCATAATTCTACGGGCGCTACTTCAACAACCACGACTGAAGTTGGTGGTG GCAGCCGCGATCATAATCACAACGGACACGTCAGCCCCACTGATGAAGACTCTTCCTATATAGATTTTGAATACTTCTAA
AA sequence Show only first row Show all	>Lus10001840 pacid=23142381 polypeptide=Lus10001840 locus=Lus10001840.g ID=Lus10001840.BGIv1.0 annot-version=v1.0 MQNNSQRLLPPGPARSMPPTGTNPQYQYQYQQQQQQQQQITSGGGGGNGMNTNTNITSTSTTSSTSSSRSDSIDSSSTNTTTTTNNIAAPLKPHTGGDSR WDSINAINSRGSPMGLSNFRLLKRLGYGDIGSVYLVELRGTTSYFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCS GGNLHSLRQKQPTKYFTEEAARFFASEVLLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSVSGGGGGGGGGTGGGAVGIV GGGASGVALGSGGGAIIDEEFAVHGCMQPSTFFPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGI FLYELLHGTTPFKVGQPLRFPDNPQVSYAARDLIRGLLVKEPHKRIAYKRGATEIKQHPFFEGLNWALVRSLAPPHVPDTVDFSQYASKEPPPSSSSASA VASAPHPPSAPTAALGDHNSTGATSTTTTEVGGGSRDHNHNGHVSPTDEDSSYIDFEYF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79250		AGC1.7	AGC kinase 1.7 (.1.2)		Lus10001840 [exp]	0	1

Compare expression of checked genes

Lus10001840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.