Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12685 192 / 4e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 69 / 7e-14 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G61770 68 / 5e-13 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G21610 62 / 1e-11 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT1G67600 62 / 1e-11 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001756 [exp] 496 / 1e-179 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001842 [exp] 307 / 5e-105 AT3G12685 118 / 3e-32 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10000883 [exp] 68 / 1e-13 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10003670 [exp] 68 / 1e-13 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030253 [exp] 65 / 7e-13 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 65 / 1e-12 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10011373 [exp] 65 / 1e-12 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10014550 [exp] 60 / 1e-11 AT3G61770 115 / 4e-33 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 58 / 2e-10 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176100 [exp] 193 / 1e-60 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G056600 [exp] 69 / 4e-14 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.002G171300 [exp] 71 / 6e-14 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.011G087100 [exp] 62 / 1e-11 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.008G080401 [exp] 54 / 3e-09 AT3G12685 54 / 8e-10 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.002G226900 [exp] 54 / 7e-09 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.014G156000 [exp] 53 / 2e-08 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10001841 pacid=23142389 polypeptide=Lus10001841 locus=Lus10001841.g ID=Lus10001841.BGIv1.0 annot-version=v1.0 ATGTTGTTGCAACAGCATTGGTTTGGGAACCCTTCCTTAGCTATCCCAATTAGGAAAGCTGAGGTCAGCCACTTTTACTCTCTTCCTCCTCCTCCTTATG CTTCCCAATTCGAGTTTAGTCTTTCGCATACCTGGAAATCAAAGCCTAATCATTTGGGATTCTACAACTCCAGAAGCCGTAGCTCAATTTGTTTCAGTTC GATTCAACCTGTGGATATCGTTGCAGGCGTTGCCCACAACAAGGTGTTGATAGCAGCAGGGGTATCGGCTGCAATCGGGCAGATATCAAAGCCATTTACT TCTGTGCTTTTCTACGGGAAAGATGTTGACTTTAGGTCCGCCTTTCAGGCCGGCGGTTTCCCTTCCACTCATTCCTCTGCAGTTGTAGCTGCAGCTACTT GCCTCGCCTTTGAAAGGGGATTCTCCGATTCGATATTCGGGCTTAGCGTGGTTTATGCTGGCCTTGTCATGTATGATGCTCAGGGAGTGAGAAGAGAAGT GGGAACCCATGCAAAAGTGCTCAACAGAGTGCTGCTGCACAAGAAACAGCAAGTAGCCAAGTCAAACGACCCTGATGATGATTTCTTGCAGCAAACACGC CTGATTGAGAAGCAGGAGGAAACGTCTTCAGTTCATCGTAACAACAACAACAGCGAAGGAGAAACACAGATGTTAGTATCTTCTACTTCTTCCACTCGCA TCAATCAACAGCCCTCAACTGAAGCTCGATTCTCCAATAGCACCGTCGCCACCAGTAGTCCTCCTGTCATTCGGCCTCCTCTGAAAGAATCTATTGGCCA CACTGAAATCGAAGTTGTTGGGGGTGCTTTCCTGGGTTTCCTTGTAAGCATAGCGGTTAACATTCTGTCTTGA
AA sequence Show only first row Show all	>Lus10001841 pacid=23142389 polypeptide=Lus10001841 locus=Lus10001841.g ID=Lus10001841.BGIv1.0 annot-version=v1.0 MLLQQHWFGNPSLAIPIRKAEVSHFYSLPPPPYASQFEFSLSHTWKSKPNHLGFYNSRSRSSICFSSIQPVDIVAGVAHNKVLIAAGVSAAIGQISKPFT SVLFYGKDVDFRSAFQAGGFPSTHSSAVVAAATCLAFERGFSDSIFGLSVVYAGLVMYDAQGVRREVGTHAKVLNRVLLHKKQQVAKSNDPDDDFLQQTR LIEKQEETSSVHRNNNNSEGETQMLVSSTSSTRINQQPSTEARFSNSTVATSSPPVIRPPLKESIGHTEIEVVGGAFLGFLVSIAVNILS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	0	1
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	1.0	0.8112
AT5G06260			TLD-domain containing nucleola...		Lus10021306 [exp]	2.0	0.7856
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10037239 [exp]	5.7	0.7471
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	6.7	0.7392
					Lus10020868 [exp]	7.3	0.7520
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10022211 [exp]	7.5	0.7607
AT2G38610			RNA-binding KH domain-containi...		Lus10019116 [exp]	8.5	0.7723
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016354 [exp]	9.2	0.7720
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	9.7	0.7261
AT4G16060			unknown protein		Lus10016832 [exp]	9.8	0.7109

Compare expression of checked genes

Lus10001841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.