Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12685 118 / 2e-32 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT2G21820 93 / 3e-24 unknown protein AT1G24350 53 / 2e-08 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G21610 49 / 2e-07 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT3G61770 49 / 2e-06 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G67600 47 / 2e-06 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001841 [exp] 319 / 1e-109 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001756 [exp] 278 / 1e-93 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 53 / 1e-08 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10011373 [exp] 52 / 4e-08 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 52 / 4e-08 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10030253 [exp] 47 / 1e-06 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10000883 [exp] 46 / 6e-06 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10035299 [exp] 46 / 1e-05 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 46 / 1e-05 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176100 [exp] 136 / 2e-38 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176200 [exp] 90 / 5e-23 AT2G21820 116 / 4e-36 unknown protein Potri.010G056600 [exp] 56 / 2e-09 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.002G171300 [exp] 51 / 3e-07 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.008G080401 [exp] 48 / 3e-07 AT3G12685 54 / 8e-10 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.011G087100 [exp] 47 / 2e-06 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.014G156000 [exp] 46 / 5e-06 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 45 / 1e-05 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10001842 pacid=23142386 polypeptide=Lus10001842 locus=Lus10001842.g ID=Lus10001842.BGIv1.0 annot-version=v1.0 ATGGTTGTTCTGACTCGGCTGAACCGAATTCCCTCTCATGAACAGGCAGTTGTAGCTGCAGCTACTTGCCTCGCCTTTGAAAGGGGATTCTCCGATTCGA TATTCGGGCTTAGCGTGGTTTATGCTGGCCTTGTCATGTATGATGCTCAGGGAGTGAGAAGAGAAGTGGGAACCCATGCAAAAGCGCTCAACAGAGTGCT GCTGCACAAGAAACAGCAAGTAGCCAAGTCAAACGACCCTGATGATGATTTCTTGCAGCAAACACGCCTGATTGAGAAGCAGGAGGAAACGTCTTCAGTT CATCGTAACAACAACAACAGCGAAGGAGAAACACAGATGTTAGTATCTTCTACTTCTTCCACTCGCATCAATCAACAGCCCTCAACTGAAGCTCGATTCT CCAATAGCACCGTCGCCACCAGTAGTCCTCCTGTCATTCGGCCTCCTCTGAAAGAATCTATTGGCCACACTGAAATCGAAGTTGTTGGGGGTGCTTTCCT GGGTTTCCTTAGAACTGAGAAGGAGATAGCGAAAAGCATATCTATCTATATAGTAATGTCAGGAGTACAAGGAGCTCATCCACCAGAGTCGAAGACACCA ACGACGTACGAGTCAGTAGCGGGAGGAGAGAACAGAACAAGGACTGACATTCACTCCAGGGAGGATCAAGGGATGATCCAAATCGACAAACTCCAGGACA AGGTTAAAGATGACCCTGTCGGTGCTAAGGGCGTCACACCAGTGTTCGGACCAGGACGTGATGATGATCAGAACAAACACTTCGATTCCGGAGTTACTGG AACTCCAGACACCGACTGA
AA sequence Show only first row Show all	>Lus10001842 pacid=23142386 polypeptide=Lus10001842 locus=Lus10001842.g ID=Lus10001842.BGIv1.0 annot-version=v1.0 MVVLTRLNRIPSHEQAVVAAATCLAFERGFSDSIFGLSVVYAGLVMYDAQGVRREVGTHAKALNRVLLHKKQQVAKSNDPDDDFLQQTRLIEKQEETSSV HRNNNNSEGETQMLVSSTSSTRINQQPSTEARFSNSTVATSSPPVIRPPLKESIGHTEIEVVGGAFLGFLRTEKEIAKSISIYIVMSGVQGAHPPESKTP TTYESVAGGENRTRTDIHSREDQGMIQIDKLQDKVKDDPVGAKGVTPVFGPGRDDDQNKHFDSGVTGTPDTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001842 [exp]	0	1
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	10.1	0.7376
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	17.1	0.6850
AT5G04980			DNAse I-like superfamily prote...		Lus10034857 [exp]	19.4	0.6861
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	28.0	0.6828
AT1G56420			unknown protein		Lus10031412 [exp]	29.8	0.6894
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011394 [exp]	52.9	0.6040
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	71.7	0.6487
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10001724 [exp]	87.8	0.6407
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	87.8	0.6257
					Lus10003592 [exp]	96.3	0.6317

Compare expression of checked genes

Lus10001842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.