Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79420 404 / 2e-138 Protein of unknown function (DUF620) (.1) AT3G19540 306 / 3e-99 Protein of unknown function (DUF620) (.1) AT1G49840 300 / 1e-96 Protein of unknown function (DUF620) (.1) AT1G27690 288 / 6e-93 Protein of unknown function (DUF620) (.1) AT5G05840 266 / 4e-84 Protein of unknown function (DUF620) (.1) AT5G06610 241 / 1e-75 Protein of unknown function (DUF620) (.1) AT3G55720 215 / 8e-65 Protein of unknown function (DUF620) (.1) AT5G66740 212 / 2e-64 Protein of unknown function (DUF620) (.1) AT1G75160 202 / 3e-60 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001755 [exp] 764 / 0 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 321 / 3e-105 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 308 / 3e-100 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 266 / 4e-84 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 264 / 6e-83 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 254 / 2e-82 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10015972 [exp] 259 / 6e-82 AT5G06610 426 / 6e-149 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 258 / 3e-81 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013534 [exp] 249 / 1e-78 AT5G06610 400 / 7e-139 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174200 [exp] 464 / 8e-163 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 435 / 3e-151 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 317 / 1e-103 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 315 / 1e-102 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 311 / 4e-101 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 276 / 3e-88 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 274 / 2e-87 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 270 / 9e-87 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 265 / 5e-85 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 224 / 9e-69 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10001843 pacid=23142383 polypeptide=Lus10001843 locus=Lus10001843.g ID=Lus10001843.BGIv1.0 annot-version=v1.0 ATGGCGACAAGATCATCAACCGGCCCACGAAACAACAACAGCAACAACAACAATAGCAACAAGCAACGATGGTGCGCCGTGCAACCCTTGACGCCATTAA TGGAAGGCCCAGACCCAGAAATGCAAGAGCAATGTACATGCTCATTATTATTGGGAAGCCATAACAACTACTATCACAAGGAGACCTCCACTGCTTCTTC TAATTGGGACACTATCCGCGAATGGTTCCGCCATCAGAAGGCCACCGGCTCTCCCGACAGTAGCAGCGACGGCATCTCTCCCCCGTCAGTACTCAATGGA TCTTCCCGGAAGCTGCTAGGAGCCAAAAATACACAAGATTTGAGACTTTTGCTCGGTGTTTTGGGATGTCCTTTAGCTCCAATTCCCATCCCTCTGCCTA ATCTGCCTAATCCACCCTTGTCTCCTGGTGAGGAGGAAGTGTGTAATACTGGCATCAAAGACATCCCAATGGCTAAATCGATGGCGCACTACATAATAAA GCAATATCTGGCGGCAACGGGATGCTTGAAGGGGGAGAGGAGGAGCATGTACGCGGCGGGGAGCGTGAAGATGATCCGGTGCGAGACTGAGGTATCGTCC GGGAAGAATGTGAAGAGTTTGGGAGGGAAGAGCGCGGTGGAACAGGGTTGCTTTGTGCTCTGGCAAATGCTGCCTTCCATGTGGTCTCTCGAACTTGCTG TTGGCATCAGCGATCGCAAGAATAATTGTAACTACCACCACCTGCTGGCCGGTAGCGACGGTAAGACTGTTTGGCGACACACACCCTGGCTCGGGACTCA TGCCGCTAAAGGACCACAACGCCCTCTACGTCGCATCATCCAGGGGCTGGACCCAAAGAGCACGGGTAGGCTATTCGGAGGAGCAGAGTGGGTGGGAGAA CAAAGCATAGGTGAAGAAGAATGCTTCGTACTGAAAGTTGCAGCAGAGCGTGCAGCAGTAATGGAGAGGAGCGAAGGCCCAGCCGAAGTACTACGCCACG TACTGTACGGCTACTTCTCCCAAAAGAGCGGCCTCCTTGTCTACTTGGAGGACTCACACCTCACCAGAGTCGCAGCTCTCTCCCCAAACAACAACCACAA CAACGATGTTGTTGATAGTATTAATTATAATGTCGATCATCAAGATGGGAGCTGCTACGTGTACTGGGAGACCACGATAGGGAGCAGGATTGGGGAGTAC AGGGAAGTTGAAGGGGTCATGATAGCGCACGAAGGGAGGTCCATTGCTACTGTTTTTCGATTTGAGGAGCAGTCTGTTCAACACAGTAGGACCCGAATGG AGGAACTTTGGCGGATTGATGATGTCGTCTTCAACGTTCCGGGCCTTTCACTTGACCACTTCATCCCTCCCGCTGACATTCTTGTACCCTGA
AA sequence Show only first row Show all	>Lus10001843 pacid=23142383 polypeptide=Lus10001843 locus=Lus10001843.g ID=Lus10001843.BGIv1.0 annot-version=v1.0 MATRSSTGPRNNNSNNNNSNKQRWCAVQPLTPLMEGPDPEMQEQCTCSLLLGSHNNYYHKETSTASSNWDTIREWFRHQKATGSPDSSSDGISPPSVLNG SSRKLLGAKNTQDLRLLLGVLGCPLAPIPIPLPNLPNPPLSPGEEEVCNTGIKDIPMAKSMAHYIIKQYLAATGCLKGERRSMYAAGSVKMIRCETEVSS GKNVKSLGGKSAVEQGCFVLWQMLPSMWSLELAVGISDRKNNCNYHHLLAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKSTGRLFGGAEWVGE QSIGEEECFVLKVAAERAAVMERSEGPAEVLRHVLYGYFSQKSGLLVYLEDSHLTRVAALSPNNNHNNDVVDSINYNVDHQDGSCYVYWETTIGSRIGEY REVEGVMIAHEGRSIATVFRFEEQSVQHSRTRMEELWRIDDVVFNVPGLSLDHFIPPADILVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	0	1
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	1.0	0.9575
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	2.4	0.9226
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	3.0	0.8975
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	3.0	0.9220
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	3.5	0.9152
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	6.7	0.8872
AT5G03110			unknown protein		Lus10026490 [exp]	7.0	0.9001
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	7.3	0.9024
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	7.4	0.8958
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	7.5	0.8884

Compare expression of checked genes

Lus10001843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.