Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79440 706 / 0 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G74920 288 / 3e-91 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 285 / 4e-90 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G48000 276 / 2e-86 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 264 / 5e-82 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G23800 263 / 3e-81 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G66658 177 / 7e-49 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G54100 174 / 2e-48 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G24270 168 / 5e-46 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT2G14170 147 / 1e-38 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023626 [exp] 274 / 2e-85 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10034115 [exp] 274 / 3e-85 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 272 / 4e-85 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10029166 [exp] 261 / 2e-80 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10023625 [exp] 259 / 2e-80 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10012999 [exp] 258 / 1e-79 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10024259 [exp] 252 / 1e-77 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043470 [exp] 247 / 8e-76 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042148 [exp] 243 / 2e-74 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174000 [exp] 709 / 0 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.015G070600 [exp] 291 / 2e-92 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 290 / 2e-92 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G074100 [exp] 281 / 3e-88 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 279 / 2e-87 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 266 / 9e-83 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.018G075000 [exp] 256 / 5e-79 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.008G106000 [exp] 178 / 5e-49 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.006G186800 [exp] 172 / 1e-47 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G020600 [exp] 172 / 2e-47 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10001845 pacid=23142388 polypeptide=Lus10001845 locus=Lus10001845.g ID=Lus10001845.BGIv1.0 annot-version=v1.0 ATGAGAGTGGCAGTGTCAGTTGTAGCAACACCACCGGCAGCCCCAACCATGATGATGATGAGGTCCTCCGCCAGACTCTTCGCCCTCTCCTCCCGCCGCT TCACCGTCTCTATGAACATGGCCGCCGCCACCTCGCCGCCTCCTCTCTCTCGGACTTTGAGTACGGAGAGTATCGCTGAACGCCTAACCAGCTCCGGCCT CTTCCGTACCAAGGGTCTCATCGGAGGCAACTGGATGGACGCTCGTGATGGAAAAACCATGCCGGTTCACAATCCCTCAACCGGAGAAGTTATCGCGGAT GTCGCGTTCATGAGTAGTAAAGACACCGTTGATGCTATCGATTATATTGGCCAACTCATTACCTTGGAGCAAGGGAAACCTCTCAAAGAAGCTATTGGCG AGGTTAACTATGGAGCTAGTTTCATTGAATACTTCGCAGAGGAAGCTAAACGTGTGTATGGAGACATCATTCCGCCAACAATTGCTGATCGTCGCATTCT AGTCCTAAAGCAGCCTGTAGGTGTTATTGCAGCAATAACACCTTGGAACTTCCCTTTGGCTATGATCACCAGGAAGGTTGGTCCTGCTCTTGCTTGTGGA TGCACAGCAGTGATCAAACCTTCTGAACTTACACCTTTGACTGCGTTAGCAGCTGCTGAACTGGCTCCTCAGGCTGGGATTCCACCGGGTGTACTGAATG TTGTTATGGGTGATGCTCCTGCAATTGGGGATGCATTGATGGCTAGTACTCGGGTTAGAAAAATTACATTCACTGGGTCAACAGCTGTGGGAAAGAAGTT GATGGCGGGTGCTGCAGGGACTGTCAAGAAGGTCTCTTTGGAACTTGGCGGCAACGCACCCTGTATAATATTTGATGATGCAGACGTTGATGTTGCTGTT AAAGGAACTCTAGGATCAAAGTTCCGCAACAGTGGGCAGACGTGTGTTTGTGCTAATAGAATACTTGTGCAAGACGGCATCTATGATAAGTTTTCCGCTG CTTTCTCCAAAGCTGTTCAGAATTTGCAAGTTGGTGATGGTTTTAGTGAAGGTGCATCCCAGGGTCCATTGATTAACGATGCTGCAATACAAAAGGTCGA ATCATTTGTTCATGATGCCATCTCAAAGGGGGCAGAAATTCTGCTTGGTGGCAAAAGACATAGCCTTGGGAAGACATTTTACGAACCAACCGTATTAGGA AATATCAAAAGCGACATGATTGTATCAAGGGAGGAGGTATTTGGACCAGTGGCCCCACTAATGCGGTTCAAAACTGAGGAGGACGCTATCAGCATTGCTA ATGACACCAACGCAGGATTGGCTGCATATATATTCACAACAAATATGCAAAGGTCATGGCGAGTGACTGAAGCTCTCGAGTATGGACTTGTTGGCGTTAA TGAAGGAGTAATTTCGACTGAGGTTGCCCCATTTGGAGGGGTGAAACAGTCCGGTCTTGGGCGGGAAGGTTCCAAGTATGGGATGGACGAATATCTGGAG ATGAAATATGTTTGCCTGGGAGATATGAACAGAAAATGA
AA sequence Show only first row Show all	>Lus10001845 pacid=23142388 polypeptide=Lus10001845 locus=Lus10001845.g ID=Lus10001845.BGIv1.0 annot-version=v1.0 MRVAVSVVATPPAAPTMMMMRSSARLFALSSRRFTVSMNMAAATSPPPLSRTLSTESIAERLTSSGLFRTKGLIGGNWMDARDGKTMPVHNPSTGEVIAD VAFMSSKDTVDAIDYIGQLITLEQGKPLKEAIGEVNYGASFIEYFAEEAKRVYGDIIPPTIADRRILVLKQPVGVIAAITPWNFPLAMITRKVGPALACG CTAVIKPSELTPLTALAAAELAPQAGIPPGVLNVVMGDAPAIGDALMASTRVRKITFTGSTAVGKKLMAGAAGTVKKVSLELGGNAPCIIFDDADVDVAV KGTLGSKFRNSGQTCVCANRILVQDGIYDKFSAAFSKAVQNLQVGDGFSEGASQGPLINDAAIQKVESFVHDAISKGAEILLGGKRHSLGKTFYEPTVLG NIKSDMIVSREEVFGPVAPLMRFKTEEDAISIANDTNAGLAAYIFTTNMQRSWRVTEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGMDEYLE MKYVCLGDMNRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10001845 [exp]	0	1
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10001427 [exp]	12.0	0.5962
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	14.8	0.7450
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10017566 [exp]	20.1	0.6870
AT1G69160			unknown protein		Lus10026677 [exp]	21.7	0.6615
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10027077 [exp]	22.5	0.6432
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Lus10034581 [exp]	42.4	0.6225
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	50.2	0.6358
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	53.0	0.6565
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040262 [exp]	78.6	0.6354
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10009974 [exp]	83.8	0.6015

Compare expression of checked genes

Lus10001845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.