Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27240 326 / 7e-107 Aluminium activated malate transporter family protein (.1) AT1G08440 322 / 2e-105 Aluminium activated malate transporter family protein (.1) AT3G11680 311 / 3e-101 Aluminium activated malate transporter family protein (.1) AT1G08430 297 / 8e-96 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT4G00910 217 / 4e-65 Aluminium activated malate transporter family protein (.1) AT5G46600 187 / 1e-53 Aluminium activated malate transporter family protein (.1) AT5G46610 186 / 4e-53 Aluminium activated malate transporter family protein (.1.2.3) AT4G17970 177 / 1e-49 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT3G18440 151 / 5e-40 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 132 / 2e-33 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013347 [exp] 409 / 2e-141 AT3G11680 232 / 6e-72 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 332 / 3e-109 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 327 / 9e-108 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 293 / 1e-94 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 226 / 1e-68 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 224 / 1e-67 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 174 / 1e-48 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 169 / 1e-46 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 164 / 7e-45 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017800 [exp] 400 / 4e-136 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 393 / 3e-133 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 376 / 7e-127 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 354 / 3e-118 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 345 / 8e-115 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 341 / 5e-113 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 337 / 2e-111 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 332 / 1e-109 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 329 / 2e-108 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 250 / 1e-77 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10001846 pacid=23158786 polypeptide=Lus10001846 locus=Lus10001846.g ID=Lus10001846.BGIv1.0 annot-version=v1.0 ATGGAAAGTATGCGATCCCGAATCAAGGAGACATTGAATAACAAGGTGGCGGGTGGTTCGTTCATGTCTGTGGTGGTGGAGGTGGCTAGAGACGACCCAC GAAGGGTGATCCATTCGTTCAAAGTAGGAGTGGCTCTTTCTTTCGTCTCCTTGATTTACTATTACAGGCCTCTTTATGACGACTTTGGCGTCTCTTCTAT GTGGGCTGTCATGACTGTCCTTGCTGTCTCTGAATTCTCTGTAGGGGCTACACTAGGGAAAGGGCTGACCAGAGGAATGGCGACTCTGCTAGCCGGAGCA CTAGGACTCGGAGCGCATCATATGGCCAACCGTTTTGGACACATTGGAGAGCGTGTCGTCACCGGCATCTTGGTTTTCCTCTTGGCTTCAGTAACAACAT TCATGAGGTTCATCCCGAAGCTGAAAGCAAGATACGATCATGGATTGGTGGTCTTCGTCTTGACCTTCTCGTTTGTTTCGGTTTCTGGCTACGGTGGCGA CGAAATGCTGGAGGTGGTCCGGAAAAGGGTGTCCACCATCATGATCGGAGGTTCTGTCTCTGTTGTAGTTTCCATGGCTTTGTTGCCTGTATGGGCTGGT GAGGATCTCCATGATCTAGTCGCTGGTAACTTGGAAAAGCTTGGTGATTTTATGGAAGGATTTGGAGATGGGTATTTTGAAGAACATGATTCTAAAACAG AGGATTTGGTGCTACCCTCATTGATGCTAGAATACAAGAGCATTCTCAACTCCAAGAACAGTGAAGAATCACTGGCTAGTTTTGCAAAGTGGGAGCCAGG CCATGGAAGGTTCAAGTTCAGCCATCCATGGAAACAATATCTCCAACTCGGGACACTAGCTCGAGAATGTGCATACAGAATCGAGACACTAAACCGCTAT CTAGCCGCTGATCACGTTCGACCACGAATTGAAATCCGGTCCAAGATCAAGGAACCGAGCAAACAAATGAGCATTGAATGCGGTAGAGCACTGAAGCAAA TGTCGGTAGCAATCAAGGCAATGCGCCCACCTTGTGCAGCCGATCCACACATCGAGTCAGCGAAATCGGCAGCCAAGGCTCTCAACTCTGTGATGAAATC TGAAGGCAGCATTGATATGGTTCAAGTTGCACCAGTGGCCACAGTTGCGTCATTGCTAGTTGATATGGTCAACTGCGTTGAAAACATTGGTGATGCAATT TATGAACTCGCTTCCAAGGCAGAGTTTTCGAGGTTGGGAAAATTGGACGGTCGAGAAGTCTTGGTTTCGAATCTGACATGTAAGGTGGGTTGTGGCCATT TTATGGTTAGGGTTAAGGAGTCAACTAATGGTTCTGATATGGTCTCAAAAGCTTGA
AA sequence Show only first row Show all	>Lus10001846 pacid=23158786 polypeptide=Lus10001846 locus=Lus10001846.g ID=Lus10001846.BGIv1.0 annot-version=v1.0 MESMRSRIKETLNNKVAGGSFMSVVVEVARDDPRRVIHSFKVGVALSFVSLIYYYRPLYDDFGVSSMWAVMTVLAVSEFSVGATLGKGLTRGMATLLAGA LGLGAHHMANRFGHIGERVVTGILVFLLASVTTFMRFIPKLKARYDHGLVVFVLTFSFVSVSGYGGDEMLEVVRKRVSTIMIGGSVSVVVSMALLPVWAG EDLHDLVAGNLEKLGDFMEGFGDGYFEEHDSKTEDLVLPSLMLEYKSILNSKNSEESLASFAKWEPGHGRFKFSHPWKQYLQLGTLARECAYRIETLNRY LAADHVRPRIEIRSKIKEPSKQMSIECGRALKQMSVAIKAMRPPCAADPHIESAKSAAKALNSVMKSEGSIDMVQVAPVATVASLLVDMVNCVENIGDAI YELASKAEFSRLGKLDGREVLVSNLTCKVGCGHFMVRVKESTNGSDMVSKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27240			Aluminium activated malate tra...		Lus10001846 [exp]	0	1
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10041165 [exp]	3.2	0.8938
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	4.9	0.8998
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002767 [exp]	5.4	0.9232
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041642 [exp]	10.0	0.9098
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	12.8	0.8690
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	20.3	0.8833
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	24.5	0.8578
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	24.6	0.8849
					Lus10024873 [exp]	29.4	0.8956
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002766 [exp]	30.0	0.8446

Compare expression of checked genes

Lus10001846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.