Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20140 329 / 5e-111 SOUL heme-binding family protein (.1.2) AT3G10130 62 / 1e-10 SOUL heme-binding family protein (.1) AT2G37970 59 / 5e-10 SOUL-1 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013345 [exp] 560 / 0 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10019445 [exp] 370 / 1e-127 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2) Lus10040682 [exp] 77 / 2e-17 AT5G20140 67 / 1e-14 SOUL heme-binding family protein (.1.2) Lus10022712 [exp] 76 / 4e-15 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10017193 [exp] 64 / 1e-11 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10011992 [exp] 55 / 1e-09 ND 40 / 7e-05 Lus10014203 [exp] 55 / 2e-08 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10000227 [exp] 54 / 3e-08 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10027752 [exp] 53 / 7e-08 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073501 [exp] 369 / 2e-126 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.016G098500 [exp] 80 / 1e-16 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 68 / 3e-13 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.015G080000 [exp] 41 / 0.0007 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10001847 pacid=23158785 polypeptide=Lus10001847 locus=Lus10001847.g ID=Lus10001847.BGIv1.0 annot-version=v1.0 ATGCCAATGGCCGCCGCCGCTCAACTTTCTCTCCGCTTCCCCTTCACTGCCACCTATGTCTCTCGGCGTTCATCCGCCTCCGTCGCCTCTGCTCGGCTCC GGCGGAACCCGAATTGGGCTCTCTGCAGGATGAGCCTATCGCAGCTGGACCAGCCCCGCCCGTCTGATTCCGTCGACGTGGAAAAGCTTGTGGATTTCCT CTACGATGATCTCCCCCATCTCTTCGACGAACAAGGGATTGATAAGAATGCCTATGACGAGCGCGTCCAGTTCCGTGACCCAGTTACTCGCCACGATGAC ATCAATGGGTATCTGTTCAACATTTCTGCTTTGAAGACTGTGTTCCGCCCCAAGTTCCAGCTCCATTGGGCCAAAAAGCTGGATATAGACAGGACCTTAC GAGATAACCACAAGATGGACGATGGTGATGCCGTTCATGATTCTTCCATGGAAGCCGGAGTTGGTGTTTACAGGGACTTCTGTAATGGGGGTCAATCCAA GCAACGGCAAGGTTTGCAGCCATGTGGTTTATGGGACATGATTCAACAGTTGAGAATTTACAAGACTCCTGAAATCGAATCGCCCGAGTACGAGATACTG AAGCGCACATCATTTTATGAGGTGAGTTTGCCTCTCCTACTGTGGGATAAGTTGAAGTATGCTACACCATTCAACGCATTTCCTTACTATGAAACCACTG GAGATCAGTTAGCAGGCTCAGCTGGTTTCAATTCTGTCACTGGGTACATATTCGGAAAGAACACAAAGAGTGAAGTTATCAAAATGACTACTCCTGTCTT CACCGAAGCAAAGCATTCCCAGCTTTCGGAAGTAGCCATCCAAGTCGTTCTTCCCATGAATAAAGACTTCAGCAACTTGCCAGATCCAATCGAAGATACT GTCAGATTAAGGAAGGTGGAAGGCGGTGTTGCTGCAGTGCACAAGTTCAGTGGGAAACCAACCGAGGAAATTGTTCGAGAGAAGGAAAAATCTCTCCGTT CCTGTCTCGTCAAGAATGACCTTAAGCCACAGCCACGCTGTTTGCTCGCTCGTTACAATGACCCTGGCCGAACATGGAGCTTCATAATGAGAAATGAAGT GCTAATATGGCTTGAAGAGTTCTCGCTAGACTAG
AA sequence Show only first row Show all	>Lus10001847 pacid=23158785 polypeptide=Lus10001847 locus=Lus10001847.g ID=Lus10001847.BGIv1.0 annot-version=v1.0 MPMAAAAQLSLRFPFTATYVSRRSSASVASARLRRNPNWALCRMSLSQLDQPRPSDSVDVEKLVDFLYDDLPHLFDEQGIDKNAYDERVQFRDPVTRHDD INGYLFNISALKTVFRPKFQLHWAKKLDIDRTLRDNHKMDDGDAVHDSSMEAGVGVYRDFCNGGQSKQRQGLQPCGLWDMIQQLRIYKTPEIESPEYEIL KRTSFYEVSLPLLLWDKLKYATPFNAFPYYETTGDQLAGSAGFNSVTGYIFGKNTKSEVIKMTTPVFTEAKHSQLSEVAIQVVLPMNKDFSNLPDPIEDT VRLRKVEGGVAAVHKFSGKPTEEIVREKEKSLRSCLVKNDLKPQPRCLLARYNDPGRTWSFIMRNEVLIWLEEFSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	0	1
AT3G63510			FMN-linked oxidoreductases sup...		Lus10039605 [exp]	1.4	0.8910
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	4.8	0.9050
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	5.7	0.8748
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003600 [exp]	7.7	0.8850
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	11.4	0.8847
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10035926 [exp]	15.0	0.8492
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	15.4	0.8906
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	21.9	0.7755
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010770 [exp]	22.8	0.8173
AT5G27290			unknown protein		Lus10033822 [exp]	24.7	0.8819

Compare expression of checked genes

Lus10001847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.