Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14310 100 / 5e-25 ATPME3 pectin methylesterase 3 (.1) AT1G53830 90 / 2e-21 ATPME2 pectin methylesterase 2 (.1) AT5G20740 57 / 3e-10 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 57 / 5e-10 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G53840 55 / 3e-09 ATPME1 pectin methylesterase 1 (.1) AT5G62360 52 / 1e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G05620 52 / 5e-08 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 50 / 1e-07 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G62770 50 / 1e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G02330 50 / 1e-07 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013344 [exp] 231 / 6e-74 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10037458 [exp] 96 / 2e-23 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10039314 [exp] 86 / 5e-20 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10003933 [exp] 79 / 2e-17 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10001466 [exp] 70 / 2e-14 AT4G02300 299 / 1e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027556 [exp] 67 / 2e-14 AT1G53830 161 / 2e-47 pectin methylesterase 2 (.1) Lus10028910 [exp] 62 / 8e-12 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 57 / 2e-10 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 57 / 3e-10 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072800 [exp] 107 / 2e-27 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 106 / 3e-27 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 101 / 2e-25 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 68 / 1e-13 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G128100 [exp] 63 / 1e-12 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 63 / 1e-12 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 62 / 3e-12 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 59 / 5e-11 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 58 / 7e-11 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G137800 [exp] 58 / 1e-10 AT5G20740 205 / 2e-67 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10001848 pacid=23158790 polypeptide=Lus10001848 locus=Lus10001848.g ID=Lus10001848.BGIv1.0 annot-version=v1.0 ATGGCCTGGTCGGAGTCAAACCGAACCAAAAATATCTTCCTACTATTCACCTTCTCCGCCGCCATCCTCATTACCGCCGCCGCCGCCACAGTACACCACG CCGTCATAAAATCATCATGCAGCACAACACTCAACCCAGAGCTCTGCCACTCCGCCGCCATCTCTTCTCTCCCTTTCGCCGCCTTAACCAACATCAAGAC AATAACCGACGTGTTGGACCTATCCCTAAACGCAACAATCGCCGCCGTACAAGCAAACGAGCAAGCCATCAAGAAAATCATCTCCTCCTGCAGCCTTACC CTGACGAAGCGGGAGAAGGCGGCCCTGGCCGACTGTGTCGAGCTTTGCGGCGAGACGATGAACGAGCTCGTGAAGACGATTGAGGAGCTTCATGGGAGCA AGAATTCGGCGGCAGAGAGAGGGGAGGATCTGAAGACGCTGCTGAGCGCTGCGATGACGAACCAGGAGACTTGTCTCGATGTGTTAGATGATGTTAAATT ATAG
AA sequence Show only first row Show all	>Lus10001848 pacid=23158790 polypeptide=Lus10001848 locus=Lus10001848.g ID=Lus10001848.BGIv1.0 annot-version=v1.0 MAWSESNRTKNIFLLFTFSAAILITAAAATVHHAVIKSSCSTTLNPELCHSAAISSLPFAALTNIKTITDVLDLSLNATIAAVQANEQAIKKIISSCSLT LTKREKAALADCVELCGETMNELVKTIEELHGSKNSAAERGEDLKTLLSAAMTNQETCLDVLDDVKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10001848 [exp]	0	1
AT5G46090			Protein of unknown function (D...		Lus10015396 [exp]	3.2	0.8788
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	11.0	0.8330
					Lus10033476 [exp]	21.2	0.7953
					Lus10011047 [exp]	26.0	0.8071
AT4G14740			Plant protein of unknown funct...		Lus10002798 [exp]	26.6	0.8044
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	40.2	0.7523
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	40.7	0.7616
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10035307 [exp]	40.9	0.7875
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	48.1	0.7683
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Lus10024973 [exp]	54.8	0.7340

Compare expression of checked genes

Lus10001848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.