Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08440 358 / 9e-120 Aluminium activated malate transporter family protein (.1) AT3G11680 345 / 6e-115 Aluminium activated malate transporter family protein (.1) AT2G27240 342 / 3e-113 Aluminium activated malate transporter family protein (.1) AT1G08430 339 / 3e-112 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT4G00910 277 / 4e-88 Aluminium activated malate transporter family protein (.1) AT5G46610 227 / 2e-68 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 223 / 6e-67 Aluminium activated malate transporter family protein (.1) AT4G17970 219 / 2e-65 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT1G18420 165 / 5e-45 Aluminium activated malate transporter family protein (.1) AT3G18440 164 / 9e-45 ATALMT9 aluminum-activated malate transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021272 [exp] 372 / 2e-125 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 364 / 4e-122 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 325 / 2e-107 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 276 / 3e-88 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 275 / 4e-87 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 223 / 4e-67 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 216 / 2e-64 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 211 / 2e-62 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013347 [exp] 186 / 2e-54 AT3G11680 232 / 6e-72 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017900 [exp] 402 / 2e-137 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 401 / 8e-137 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 392 / 3e-133 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 382 / 3e-129 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 382 / 4e-129 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 381 / 4e-129 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 370 / 8e-125 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 354 / 3e-118 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 345 / 1e-114 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 311 / 3e-101 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10001849 pacid=23158783 polypeptide=Lus10001849 locus=Lus10001849.g ID=Lus10001849.BGIv1.0 annot-version=v1.0 ATGGCGGCACTGGTCTCCAAAATCAAAGGGGCAGCTGAGGAGGCTAAGAGATTGGGAGAAGATGATCCCAGGAGAATATTCCATTCTCTTAAAGTCGGAC TCGCAATCACCATCGTCTCCATGGTTTTCTACTTCAACCCCGTCTACGAAGGCTTCGGGGTCTCTGCCATGTGGGCTGTCCTCACTGTCGTCGTTGTCTT TGAATTCTCCGTAGGCAAAATGCTAGCCACAGTACTCGGAGGAGCCCTAGGATATGGGGCCCACTGGACAGCTAGACACACTGGAGAGATTGGAGAGCCC ATACTCCTTTCAATTTTCGTCTTCATTTTTGCGGGAGTGGCGACTTACGCACGGTTTGCACCAAAGATAAAGGCGAGATATGATTATGGGATGATGGTAT TCATCCTGACTTTCTGTTTGGTATCAGTGTCTGGTTACCGAGACGACGAGGTCTTAAAAATGGCGGTGAGGAGGGTCGTCACCATAATTATGGGAAGTTG TGTGTGTCTTCTTATTAGTCTTTTCGTCTTTCCTGTTTGGATCGGGCAAGAACTACACAACCACATTGCTACCAACTTGGAACACCTTGCCTCCTTTCTG CAAGGATTTGGAGACGAGTACTTTTTAAGCGAGATCGAGCAGCCCTTGAATGACAAGTCGTTCTTGCGAGGTTACAATAAAGTGTTGACTACCCAAAGTA ATGAAGAAAACATGGCTAATTTGGCTAGATGGGAACCTGGACATGGTGAGTTCAGGTTTGGTCATCCATGGGAACAATACCTCACAGTTGGAACCTTGGC TCGGCAGTGTGCTTATAAGATTGAAGCCCTCAGCTGTTATGCCTCTAATCCACTCTTCCAAAGCACTAAACCAGAAATGAAGACCAAAATAGAGGATCCA TGCAAGAGGCTCTGCAGCGAAACAGGGAAGGCCCTAAGCGAGCTAGCCACCTCCATTAGGACAATGACCAAACTACCCTCATCATCATCATCATCAAATT CCCACATTGCCAACTCGAAAGAAGCTGCTGAGGCTCTCCGTCGTTGCTTCCTCCTAATTACTACTCCGGACAATAACTTTAATCTCCTCGAGATAGTCCC CGTTGCCACCGTGGCATCTCTTCTGTTGGAAGTTGTGGCCTGCACCGAAAACATAGCTCAGTCGGTTAGCCAACTCTCCGACCTAGCCAAGTTCAAGAAC GCTACGGCAGTGCCGTCGACGTCCTTGCTGCCGTCGTTTTCAGCTTCCCGGAGGACGGCACCGGAGCCGGTGGGGACTGGTGAACAAGGTCAACAACATG TTATCACCGTAGGGGAGTGA
AA sequence Show only first row Show all	>Lus10001849 pacid=23158783 polypeptide=Lus10001849 locus=Lus10001849.g ID=Lus10001849.BGIv1.0 annot-version=v1.0 MAALVSKIKGAAEEAKRLGEDDPRRIFHSLKVGLAITIVSMVFYFNPVYEGFGVSAMWAVLTVVVVFEFSVGKMLATVLGGALGYGAHWTARHTGEIGEP ILLSIFVFIFAGVATYARFAPKIKARYDYGMMVFILTFCLVSVSGYRDDEVLKMAVRRVVTIIMGSCVCLLISLFVFPVWIGQELHNHIATNLEHLASFL QGFGDEYFLSEIEQPLNDKSFLRGYNKVLTTQSNEENMANLARWEPGHGEFRFGHPWEQYLTVGTLARQCAYKIEALSCYASNPLFQSTKPEMKTKIEDP CKRLCSETGKALSELATSIRTMTKLPSSSSSSNSHIANSKEAAEALRRCFLLITTPDNNFNLLEIVPVATVASLLLEVVACTENIAQSVSQLSDLAKFKN ATAVPSTSLLPSFSASRRTAPEPVGTGEQGQQHVITVGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08440			Aluminium activated malate tra...		Lus10001849 [exp]	0	1
AT1G72490			unknown protein		Lus10015679 [exp]	1.7	0.9737
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	3.2	0.9710
					Lus10020564 [exp]	3.9	0.9637
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	4.9	0.9603
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	6.0	0.9463
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	12.2	0.9587
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	14.1	0.9347
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	16.4	0.9521
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	17.0	0.9430
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	17.5	0.9429

Compare expression of checked genes

Lus10001849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.