Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08460 534 / 0 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT3G18520 148 / 1e-39 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT5G61070 146 / 1e-38 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT5G61060 145 / 4e-38 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT4G33470 139 / 6e-37 HDA14, ATHDA14 histone deacetylase 14 (.1) AT3G44680 102 / 7e-24 HDA09, HDA9 histone deacetylase 9 (.1) AT5G63110 102 / 2e-23 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT4G38130 92 / 5e-20 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G26040 51 / 9e-07 HDA2 histone deacetylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013343 [exp] 764 / 0 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10010889 [exp] 143 / 2e-38 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10024919 [exp] 142 / 2e-37 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10022906 [exp] 140 / 2e-36 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10034689 [exp] 140 / 3e-36 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10017845 [exp] 130 / 7e-33 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10020570 [exp] 103 / 5e-24 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10012713 [exp] 101 / 2e-23 AT4G33470 508 / 2e-180 histone deacetylase 14 (.1) Lus10019486 [exp] 101 / 2e-23 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020500 [exp] 563 / 0 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 149 / 4e-41 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.004G092900 [exp] 144 / 7e-38 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 138 / 8e-36 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.001G460000 [exp] 104 / 2e-24 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.012G083800 [exp] 102 / 8e-24 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.015G082500 [exp] 99 / 1e-22 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.004G209800 [exp] 95 / 4e-21 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 95 / 5e-21 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.006G230300 [exp] 56 / 2e-08 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10001850 pacid=23158788 polypeptide=Lus10001850 locus=Lus10001850.g ID=Lus10001850.BGIv1.0 annot-version=v1.0 ATGGCCGGCGACGGCGAGGCTTCTTCAGCAATTCAAACAGCAACAAACCGCATAGACGTGTTCTGGCACGAGGGAATGCTGAAACACGACGCAGGCTCCG GCGTCTTTGACACCGCCGACAACCCTGGCTTCCTCGACGTGCTCGAGAAGCACCCGGAGAACGCTGACAGGATAAGGAACATGGTCTCCATACTCAAGCG AGGTCCAATCGCTCCTTACATTTCCTGGCACCTCGGTAGACCCGCTCAGATCCCCGAATTGCTCTGCTTCCACACATCAGGCTATATAAACGAGCTGGTT AAAGCAGACAAAGAAGGAGGGAAAAAGCTCTGTGATGGGACTTTCTTAAACCCTGGATCTTGGGACGCTGCTCTTCTTGCAGCTGGTACTACACTCTCAG CAATGAAGCACATTCTCGACGGAAATGGTAAAGTTGCGTATTCATTGGTTAGACCTCCTGGTCACCATGCTCAAACCACTCAAGCTGACGGCTACTGCTT CCTTAACAATGCCGGCATCGCGGTTCAGTTTGCTTTGGATTCGGGGTGTGAGAAGATTGTGGTTATTGACATCGATGTTCATTATGGGAACGGAACTGCT GAAGGGTTCTTCTGGACCAACGAAGTGCTCGCGATTTCGTTGCATATGGACCATGGCACTTGGGGGCCTTCTCATCCGCAGAGTGGTTCTGTTGATGAGA TAGGCGATGAAGAGGGTCATGGGTATACTATGAATATTCCTCTGCCTAATGGAACTGGTGACAAAGGGTATCTGCATGCTTTTAATGAACTGGTTGTGCC TGCTGTTAATGGCTTTCAACCTGACATGGTAGTTTTCGTCGTTGGCCAAGATTCAAGTGCTTTTGACCCAAACGGAAGGCAATGCTTGACAATGGACGGC TATAGAGAGATTGGCCGGATTGTTCATGGCTTGACGAAGGCACACAGTGGCGGGCGCCTTCTTATAGTTCAAGAAGGTGGATATCACATCACCTACTCAG CTTATTGTCTTCATGCAACGCTTGAAGGGGTGCTGAACCTTCCAGAGACTCTTTTACCTGATCCCATAGGGTACTACCCTGAGGATGAAGCATTTGCAGT GAATGTTATTGATTCAATCAAAAAGTACCAGAGAGACGCTTTCCCATTTCTCAAGCAAGCTTAG
AA sequence Show only first row Show all	>Lus10001850 pacid=23158788 polypeptide=Lus10001850 locus=Lus10001850.g ID=Lus10001850.BGIv1.0 annot-version=v1.0 MAGDGEASSAIQTATNRIDVFWHEGMLKHDAGSGVFDTADNPGFLDVLEKHPENADRIRNMVSILKRGPIAPYISWHLGRPAQIPELLCFHTSGYINELV KADKEGGKKLCDGTFLNPGSWDAALLAAGTTLSAMKHILDGNGKVAYSLVRPPGHHAQTTQADGYCFLNNAGIAVQFALDSGCEKIVVIDIDVHYGNGTA EGFFWTNEVLAISLHMDHGTWGPSHPQSGSVDEIGDEEGHGYTMNIPLPNGTGDKGYLHAFNELVVPAVNGFQPDMVVFVVGQDSSAFDPNGRQCLTMDG YREIGRIVHGLTKAHSGGRLLIVQEGGYHITYSAYCLHATLEGVLNLPETLLPDPIGYYPEDEAFAVNVIDSIKKYQRDAFPFLKQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10001850 [exp]	0	1
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10022040 [exp]	2.0	0.9603
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	2.6	0.9651
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	8.8	0.9591
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	10.0	0.9500
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	10.1	0.9535
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	11.7	0.9585
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	12.6	0.9526
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10036228 [exp]	12.7	0.9072
					Lus10032253 [exp]	13.0	0.9561
					Lus10042887 [exp]	13.7	0.9492

Compare expression of checked genes

Lus10001850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.