Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01820 635 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 619 / 0 TMK1 transmembrane kinase 1 (.1) AT3G23750 417 / 6e-131 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 376 / 8e-116 Leucine-rich repeat protein kinase family protein (.1) AT3G58690 232 / 9e-68 Protein kinase superfamily protein (.1) AT1G07870 229 / 2e-66 Protein kinase superfamily protein (.1.2) AT1G76370 226 / 6e-66 Protein kinase superfamily protein (.1) AT1G23540 234 / 1e-65 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G20650 225 / 1e-65 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G70460 234 / 2e-65 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013342 [exp] 1494 / 0 AT2G01820 685 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021275 [exp] 857 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 835 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 426 / 2e-133 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 424 / 3e-133 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 407 / 2e-126 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 400 / 1e-124 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 400 / 3e-124 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 396 / 1e-123 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217700 [exp] 954 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 895 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 871 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.017G134900 [exp] 636 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 616 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 504 / 2e-163 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 423 / 6e-133 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 417 / 6e-131 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G103000 [exp] 417 / 1e-130 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 414 / 1e-129 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001851 pacid=23158789 polypeptide=Lus10001851 locus=Lus10001851.g ID=Lus10001851.BGIv1.0 annot-version=v1.0 ATGATGAATTTGAGCTGGTTTTTCCTAATTCTGTGTTTCCTGAAATGGGTTTACGCCGTTACCGATCCAAACGACTTCAAAGTGCTGATGGATTTCAAAA AGGGCTTGAAAAACCCTGACCTCCTCCGGTGGCCGGCAACCGGCGATGATCCATGCGGCCCGCCGCTGTGGCCACATGTGTTCTGTTCCGGCGGAAGAGT GACCCAGATTCAGGTCCAGAACATGAGCCTCGTCAGTACCTTGCCGGAGAATTTCAACCAGCTGATAAAGCTTTACAATTTGGGCCTCCAGAAGAACAAA TTCGCCGGAAAGCTCCCGACTTTCAGAGGCTTATCCGAATTGCAGTTCGCATACTTGGATTACAACGATTTCGACCTGATTCCTTTCGATTTCTTCGAAG AACTCGACAGCATTCGGGTTCTGGCGTTGGATCAAAACCCCCTGAATATAACCACAGGTGGGTGGAGTTTCCCTACTGCGTTGACCAATTCCGGTCAACT CACCAATCTGTCAATGATGAATTGCACTTTGGTCGGTCCTTTGCCTGGATATCTAGCCACATTGCCGTTGTTGAACTCTCTGAAGCTTTCGTACAACCGG CTGGCCGGAGAAATCCCTCCAAAATTCGGTGGCTCTTCGAGTTCGATTTCGACTCTCTGGCTCAACAACCAGGGTGGAGGTAATAAAATGAATGGTACAT TGGATGTTCTTAGTGAGATGACTTCACTAACACAGGTTTGGCTTCACGGGAACGAATTCTCCGGTACGATACCGGATAGAATCGGGCATCTAGTCTTGTT GAAGGAGCTTAATCTTAATGGTAATAACCTTGTTGGTCTTGTTCCTCAAGGTTTAGCTGATTTGGACCTTGATGAACTCGACTTGAACAACAATTATCTG ATGGGCGCCATCCCGAATTTCGAGGCGAAAAAGGTTAGTTTCGAATCTAACTCGTTCTGTCAGTCGAAACCGGGAATTCCATGTGATGAACAAGTGAATG TGCTGTTGGATTTCATCTCTGATTTAGGGTTTCCTGTTAGTCTTGCCTCTGAATGGAAGGGTAACAACCCATGTCAATGGACCGGTTTGAGCTGCGATGT GACCAACTCCAAAGTTTCCGTTATCAGTCTGCCTAGAAGGAACTTAACTGGTACTCTCAGTCCTTCACTTGCTAAGTTAACTTCATTGCATCATGTTAAT CTAGCAGGAAACAGTTTAACTGGTTCGATTCCGATGAATTATACCGGTTTGGAGTTCTTAAGAGTGTTCGATGTCGGTGGAAACAATCTTAGTCCTCAGC TGCCTGATTTTCGAGACAATGTTAAGCTCGTTATCGACGGAAATGCCCTTCTTGTCCAGACCCAAAGTCAGCCACCTAGTCCTACTAGTAGTAGTACTCC TCCACTTCCTCCAAGATCAAAACCGATTCGAGTTCCACCACCGGTTCAACCGCTTCCAGTCGAAAGATCGAAAAGAAACAAACTTGTATACATAGCTGCC AGTGTAGCTGGTATAGCATTGACAATGTTGGCGCTCGGTTTGTGTGTGTACTTTTTCTGTGCGACGAAGAACGAAAAAGCGGCTTCTTTCAATCCGGAGA GTATTCCGAAGGTGACAGATATGAACTACACAGGACCGTTGATCAGTCAAACCGGAAGCATTTCATTGAGTAGTGGATGTACTTGTACAACAGACGACTC CGGTGGAGGCATGGTCTTATCTGTCCAAGTTCTCAAAAAAGTGACCGATGATTTTGCCTCGGGAAACGAGCTAGGCCGCGGAGGGTTTGGAACGGTATAT AAGGGCCGGTTGGAAGACGGGACGATGATAGCTGTAAAGAGAATGGAAGCTTGTGGTGTGTTCAATAACGTCAGCAAAGGCCTCGGAGAATTCGATGCCG AAATAAGGGTCCTCTCTAGGGCTCGACACCGACATTTGGTCTCGCTTTTAGGGTACGCGATCGAAGGATCGGAGAGGCTTCTCGTATACGAGTACATGTC TCAGGGTGCTCTGAGTCGACATCTTTTCGATTGGCGGAAATTCAACATGGATCCTTTGTCTTGGACGAGGAGAGTCGGGATTGCGCTTGATGTCGCGAGA GGAATGGAGTACTTACATAGTATGGCCAGAGAGACGTTCATTCATCGCGATCTTAAGTCGTCCAATATTCTTCTTGGAGACGATTTTCGTGCCAAGGTGT CTGATTTTGGGTTGGTGAAGCTTGCTCAGAATGGCCAGGTTTCCGTCGCGACTAAGCTCGCTGGGACGTTCGGGTACCTTGCACCTGAATATGCAGTGAC AGGAAAGATCACAACGAAATCCGATGTGTTCAGCTATGGAGTGGTGCTGATGGAACTATTGACGGGACTAACAGCCCTGAACGACAGCCGCACTGAGGAA TGCAGGTACTTGCCAGACTGGTTTCGACACATCAGATCAGACAGAGAGAACATCACGAACGCCATAGACCCAACTCTCGAGAAAACCGAAGAGACAATAA AAAGCGTGGCGGTAGTGGTGGAACCGGCAGGGCACTGCACGGCAAGAGAGCCGAGCCAGCGGCCTGATATGAGTCATGTGGTGAACGTGCTCGCACCGCT CGTGGAGAAGTGGAAGCCGTCCGATGATGACGTGTCTCAGAATTTTTCAGGGATAAATCTCCAGTCTCCGCTTATTCAGATAGTGAAAGTCTGGAAGGAG CAGAGCAACAACAATACTACTAGTTCTTCAGGTACTGAAACATTAACTTCGGTGAGTTTTGCTGATAGCAAGAGCAACTCGACCTGCGCAACTTGGTGTC CTGAGTCTTTTGGTTCGGGTAATTGTCGATGA
AA sequence Show only first row Show all	>Lus10001851 pacid=23158789 polypeptide=Lus10001851 locus=Lus10001851.g ID=Lus10001851.BGIv1.0 annot-version=v1.0 MMNLSWFFLILCFLKWVYAVTDPNDFKVLMDFKKGLKNPDLLRWPATGDDPCGPPLWPHVFCSGGRVTQIQVQNMSLVSTLPENFNQLIKLYNLGLQKNK FAGKLPTFRGLSELQFAYLDYNDFDLIPFDFFEELDSIRVLALDQNPLNITTGGWSFPTALTNSGQLTNLSMMNCTLVGPLPGYLATLPLLNSLKLSYNR LAGEIPPKFGGSSSSISTLWLNNQGGGNKMNGTLDVLSEMTSLTQVWLHGNEFSGTIPDRIGHLVLLKELNLNGNNLVGLVPQGLADLDLDELDLNNNYL MGAIPNFEAKKVSFESNSFCQSKPGIPCDEQVNVLLDFISDLGFPVSLASEWKGNNPCQWTGLSCDVTNSKVSVISLPRRNLTGTLSPSLAKLTSLHHVN LAGNSLTGSIPMNYTGLEFLRVFDVGGNNLSPQLPDFRDNVKLVIDGNALLVQTQSQPPSPTSSSTPPLPPRSKPIRVPPPVQPLPVERSKRNKLVYIAA SVAGIALTMLALGLCVYFFCATKNEKAASFNPESIPKVTDMNYTGPLISQTGSISLSSGCTCTTDDSGGGMVLSVQVLKKVTDDFASGNELGRGGFGTVY KGRLEDGTMIAVKRMEACGVFNNVSKGLGEFDAEIRVLSRARHRHLVSLLGYAIEGSERLLVYEYMSQGALSRHLFDWRKFNMDPLSWTRRVGIALDVAR GMEYLHSMARETFIHRDLKSSNILLGDDFRAKVSDFGLVKLAQNGQVSVATKLAGTFGYLAPEYAVTGKITTKSDVFSYGVVLMELLTGLTALNDSRTEE CRYLPDWFRHIRSDRENITNAIDPTLEKTEETIKSVAVVVEPAGHCTAREPSQRPDMSHVVNVLAPLVEKWKPSDDDVSQNFSGINLQSPLIQIVKVWKE QSNNNTTSSSGTETLTSVSFADSKSNSTCATWCPESFGSGNCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	0	1
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	1.4	0.9240
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034496 [exp]	2.0	0.9069
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034495 [exp]	5.5	0.9044
AT5G58160			actin binding (.1)		Lus10024450 [exp]	6.2	0.8619
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	7.1	0.8903
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	7.3	0.8759
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	8.0	0.8645
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	9.2	0.8685
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	12.0	0.8689
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	12.4	0.8587

Compare expression of checked genes

Lus10001851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.