Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05750 285 / 7e-94 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 176 / 2e-51 MEF21 mitochondrial editing factor 21 (.1) AT2G33760 177 / 3e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 176 / 5e-51 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77170 174 / 5e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G59720 176 / 7e-51 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 176 / 1e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G28640 173 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 176 / 4e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 175 / 1e-49 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013341 [exp] 385 / 5e-133 AT1G05750 525 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 189 / 2e-55 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026886 [exp] 178 / 7e-52 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030125 [exp] 177 / 7e-52 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10033858 [exp] 178 / 2e-51 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 178 / 2e-51 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 176 / 3e-51 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033026 [exp] 179 / 4e-51 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 178 / 4e-51 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217600 [exp] 319 / 1e-106 AT1G05750 548 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 193 / 1e-56 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 188 / 3e-55 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G135600 [exp] 187 / 7e-55 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G052300 [exp] 184 / 4e-54 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 186 / 5e-54 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 184 / 1e-53 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 183 / 1e-53 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 184 / 2e-53 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 183 / 2e-52 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001852 pacid=23158795 polypeptide=Lus10001852 locus=Lus10001852.g ID=Lus10001852.BGIv1.0 annot-version=v1.0 ATGCGCCTCTCCGCCGTGGAACCAAATCACGTCACCTTCGTAACTTTACTCTCCGCATGCGCCGATCACCCATCAGAAGGCAGATCCTTCGGCCGCGTGA TTCACTCCTACCTCCGAAAATTGGGCCTGGATAGGAACCAAGTGGTGGTCTGGACGGCACTGGTCAAAATGTACGCCAAGTACGGCGAGTTGGAGCTCGC TAGGGTCTGCTTCGACGAGATCAAGGGTCTGTTCGGGGAAGCGATCGAGTCGTTTCGGGAGATGCAGGCTGCCAAAGTGGTCCCCGATTACGTGACTGTA ACCTCTGTTCTCGCCGCCTGTGCTAATCTTGGCGCACTCGGGTTGGGATTATGGATCCATCGCTATATTCTACACCAAGAGTGGAGAAACAATGTAAGGA TACAGAACTCGTTGATCGACGTGTATGCCAGATGCGGATGTGTCGAATTAGCCCGCCAAGTGTTTGACAAAATGCCCCAAAGAACTCTGGTCACCTGGAA TTCGATGATCGTCGGTCTGGCTACAAACGGATTCGCGGAACAAGCTCTGGAATGCTTCAAAAAAATGCGAAAAGAAGGATTCAATCCTGATGGAGTAGGC TTCACCGGTGCTCTTACAGCCTGTAGTCATGCCGGTTTCATCCAGGAAGGGTTACAGTATTTCGACCTCATGACGAAACAGTACAAGATCCCTCCCCGGA TCGAACACTATGGCTGCATTGTGGATCTTTACAGCAGAGCAGGGGAATTGGAAGCTGCAATGAACGTAGTGGAAAGTATTGAGTATGAAGCCAAACGACG TCGTATTAGGGTCACTACTTACAGCTTGCAAGAGTTGTAA
AA sequence Show only first row Show all	>Lus10001852 pacid=23158795 polypeptide=Lus10001852 locus=Lus10001852.g ID=Lus10001852.BGIv1.0 annot-version=v1.0 MRLSAVEPNHVTFVTLLSACADHPSEGRSFGRVIHSYLRKLGLDRNQVVVWTALVKMYAKYGELELARVCFDEIKGLFGEAIESFREMQAAKVVPDYVTV TSVLAACANLGALGLGLWIHRYILHQEWRNNVRIQNSLIDVYARCGCVELARQVFDKMPQRTLVTWNSMIVGLATNGFAEQALECFKKMRKEGFNPDGVG FTGALTACSHAGFIQEGLQYFDLMTKQYKIPPRIEHYGCIVDLYSRAGELEAAMNVVESIEYEAKRRRIRVTTYSLQEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10001852 [exp]	0	1
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	7.3	0.7012
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	13.0	0.6983
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	19.4	0.6736
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	26.2	0.6500
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029587 [exp]	32.9	0.6518
AT2G40316			unknown protein		Lus10017429 [exp]	42.8	0.6052
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10023251 [exp]	44.4	0.6478
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	49.3	0.6389
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10010736 [exp]	55.0	0.6246
AT3G62930			Thioredoxin superfamily protei...		Lus10005940 [exp]	74.3	0.6199

Compare expression of checked genes

Lus10001852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.