Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44190 451 / 4e-159 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 442 / 2e-155 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G08740 46 / 4e-05 NDC1 NAD(P)H dehydrogenase C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013339 [exp] 675 / 0 AT3G44190 497 / 6e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10008365 [exp] 202 / 3e-62 AT3G44190 305 / 9e-103 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10004789 [exp] 142 / 4e-41 AT3G44190 140 / 4e-41 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10032131 [exp] 47 / 1e-05 AT5G08740 610 / 0.0 NAD(P)H dehydrogenase C1 (.1) Lus10014555 [exp] 47 / 2e-05 AT5G08740 647 / 0.0 NAD(P)H dehydrogenase C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217800 [exp] 486 / 8e-173 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10001856 pacid=23158793 polypeptide=Lus10001856 locus=Lus10001856.g ID=Lus10001856.BGIv1.0 annot-version=v1.0 ATGACTGGAATCGTGGAAAGCCAGAAGGACTCATCGTCATCGACTATCGGACGGCGGCTAGTCATTGTCGGAGGAGGTGTCGCCGGTTCACTGCTCGCCA AATCTGCCCAATTCACCGCCGACGTTACCCTAATTGACCCGAAGGACTATTACGAGATTACATGGGCAAACTTGAGGGGTATGGTAGAGCCTGCATTTGC GGAGAGAATAGTGATCAAGCATCGAGATTACTTCACGAACGGACGTATCGTGACATCTCATGCAATCAATATCACGGAGAAAGAAGTATTGACTTATGCT GGAGAATCAGTTCCGTATGATTATCTTGTTATTGCAACTGGCCACAAAGATCCTCTGCCGGAAACTAGGAAGGATAGACTCGCCCAATTCCGTGCAGAAA ATGAGAGGATCAAGTCAGCTAGTTCCATTTTGATAATCGGAGGAGGTCCCTCTGGAGTCGAACTTGCTGCCGAAATTGCTGTCGATTTCCCCGACAAGGA GGTGACACTGGTTCACAACGGTCCGAGGCTGCTGGAATTTATCGGACCAAAGGCGGGAGCCAAGGCACTGAAATGGCTGAAATCCAAGAAGGTGGAAGTA AAGCTGGAGCAGAGAGTTGATTTAAACAACGTCTCGGATGTCGATGGCAGCAAAGTATATCATACAACATTAGGGGAGACCATCAAAGCAGATCTCCACT TCCTCTGCGCAGGGAAACCTCTAGCATCATCATGGCTAAAGGACACAATACTGGGGGAAAACCTGGATTCCAAAGGCAGGTTGATGGTTGACGAACATTT GAAGGTCAAGGGCAGAGACAACGTCTTCGCTATCGGAGACATCACCGATATTCCCGAGATGAAACAAGGGTATCTAGCGCAAAGCCATGCTACGGTGGTT GCAAAGAATCTGCAGGTGATGATGAGCAGTACTGGGAAACAATGCAGCACGCAATGCAGGATGAGCAGTTACAAACCGGGATCGGAGATGGCGATTGTTT CGCTTGGCAGAAGGGAAGCAGTGGCACAGTTTCCGTTTGTGACAGTGGGCGGTGTTCTTCCTGGCTATATCAAGTCCAGGGACATGTTTGTGGGGAAAAC CAGGAAGCTAATGGGACTACACTCTAATGTCGTAGAACTCGAAACAGAGGATTGA
AA sequence Show only first row Show all	>Lus10001856 pacid=23158793 polypeptide=Lus10001856 locus=Lus10001856.g ID=Lus10001856.BGIv1.0 annot-version=v1.0 MTGIVESQKDSSSSTIGRRLVIVGGGVAGSLLAKSAQFTADVTLIDPKDYYEITWANLRGMVEPAFAERIVIKHRDYFTNGRIVTSHAINITEKEVLTYA GESVPYDYLVIATGHKDPLPETRKDRLAQFRAENERIKSASSILIIGGGPSGVELAAEIAVDFPDKEVTLVHNGPRLLEFIGPKAGAKALKWLKSKKVEV KLEQRVDLNNVSDVDGSKVYHTTLGETIKADLHFLCAGKPLASSWLKDTILGENLDSKGRLMVDEHLKVKGRDNVFAIGDITDIPEMKQGYLAQSHATVV AKNLQVMMSSTGKQCSTQCRMSSYKPGSEMAIVSLGRREAVAQFPFVTVGGVLPGYIKSRDMFVGKTRKLMGLHSNVVELETED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10001856 [exp]	0	1
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039745 [exp]	7.9	0.9307
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	8.9	0.9189
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	12.4	0.9218
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	15.5	0.9215
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	16.3	0.9281
AT5G47550			Cystatin/monellin superfamily ...		Lus10027320 [exp]	17.0	0.8798
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Lus10030362 [exp]	19.1	0.9132
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	29.2	0.9143
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	31.7	0.9070
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	32.4	0.9061

Compare expression of checked genes

Lus10001856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.