Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44200 792 / 0 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G04810 429 / 3e-139 ATNEK2 NIMA-related kinase 2 (.1.2) AT3G20860 423 / 3e-139 ATNEK5 NIMA-related kinase 5 (.1) AT5G28290 426 / 2e-138 ATNEK3 NIMA-related kinase 3 (.1) AT1G54510 423 / 1e-136 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G63280 414 / 5e-134 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G12200 316 / 1e-96 ATNEK7 NIMA-related kinase 7 (.1.2) AT5G18700 142 / 4e-34 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT3G53930 140 / 4e-34 Protein kinase superfamily protein (.1.2) AT2G37840 140 / 6e-34 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013338 [exp] 1720 / 0 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 428 / 4e-139 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 428 / 6e-139 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 428 / 1e-138 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10040499 [exp] 426 / 1e-137 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 417 / 2e-130 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10009186 [exp] 397 / 1e-126 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 397 / 1e-126 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10031834 [exp] 380 / 3e-122 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218100 [exp] 978 / 0 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 940 / 0 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.016G051900 [exp] 436 / 2e-141 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.002G049400 [exp] 431 / 7e-140 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.006G056300 [exp] 433 / 9e-140 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G018700 [exp] 424 / 8e-138 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.005G051600 [exp] 426 / 3e-137 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 424 / 5e-137 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.003G205400 [exp] 420 / 2e-136 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 141 / 6e-34 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001857 pacid=23158787 polypeptide=Lus10001857 locus=Lus10001857.g ID=Lus10001857.BGIv1.0 annot-version=v1.0 ATGGATCAGTATGAGATCATGGAGCAGATCGGCCGAGGTGCATTTGGCGCCGCCATTCTAGTCCATCACAAAGTGGAGAAGAAGAAGTACTACACACAGT CTTCTGTGCTCTTGTATGTTCTGAAGAAGATCCGGCTCGCTCGCCAAACGGAACGATGTCGCCAATCTGCTCATCAAGAAATGGCGCTCATTGCTCGAAT TCAGCACCCTTACGTTGTCGAGTACAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTCTGTATTGTGACTGGATACTGTGAAGGTGGAGATATAGCTGAA CTGATGAAGAAGTCAAATGGTGTTTATTTCCCTGAGGAGAAACTTTGCAAGTGGTTCACTCAACTGCTCTTAGCTGTTGAATATCTTCATTCTAATTATG TCCTCCACCGTGATCTGAAATGTTCAAATATCTTTCTGACAAAAGATCATGATGTTCGCCTTGGGGATTTCGGACTTGCTAAAACTTTGAAGGCAGATGA CTTGGCTTCTTCGGTGGTTGGGACTCCGAATTACATGTGTCCGGAGCTTCTTACAGATATTCCATATGGCTTTAAATCGGATATTTGGTCTTTAGGTTGC TGTATGTATGAGATGGCTGCTCATCGTCACGCTTTCAAAGCTTTTGATATGGCTGGACTGATAAGCAAGATAAATCGTTCATCAATGGGTCCTTTGCCTT CTTGCTATTCTCCATCATTGAAATCACTAATTAAATGCATGCTGAGGAAAAATCCCGAACATCGGCCTAGTGCGTCCGAGGTCCTAAAGCATCCCTACTT GCAGCCATATGTGGAACAGTACCGTTCCTCTTTTAGTCCTCCAATTTGCTCAGCTGATAGACGTCTTTCTGCTAGCCGTGCTAATAAAAAAAGTATGGCC GAGAGCCAGAGCAGCAATAGTTCTAGTAGCGATAGAGACAGTTACCTTTCAAGTAAGAGAAATATTTCTGCAGTGGCATCAAATTGCAAGAATAAAGGTA CTGATACAGACTTGGCCTCGGTTGATGATGAAGATGATAATGACACTGAACAAGCCACATCAGGCGAAGGGGAACACCATCGTACTGTTCATACAGAGAA AATCAATGAACGGAAAGCGATGAAGTTCAATCATGAAGAGAATGGATCCAATGTTGAATCCAAACAGCCTAACGCCATTAGAAGTATTATGATAGCCTTG AAAGAAGGAAAGGCCAGAGAAAATGGCTCACCACTTAGAGGTGCTCGTCCAAAAGCAGTAGGTGTAATGACACCAAGGAGTAACACGGAACCTTTGTCTA GAATACCGAAACCTACTGCCATTGCTCCTAGTTTGAAGAATAATGTAGATGCTCCAACTGCTGCGCAAGCAAAGTTTGGATTTGAATCCATGAAGCGGAT TCAAGGATCAAACCCTTCAAAGCACCAGTTACCAGTACCTGACTCCTCGCCAAAAACGAAACCGAGAAATGATGGAATTCCTCCATCTTTCCCTGTAAAG AATATCGGTGAGGGACTTGCTGCAAAGTCCAGGCTGAGAACTCCACCTTCCAACATTGTTCGACGGTGTTCATTCCCTGGACCGAATAGACAAGGCGGAT CCGATCTCCCAACTGATGTTTCCGGCATGACTAAGTCCCCTCCAAATACTTCTCGGAAAGTGCCTGATCTGCAGTTCACACACTTCACCAAGGAAGTCAA GCAAGAGAAAGCTGCAGGTGGAGTTTCGAGAGTGTCTCAAACAGATAGCAGTAACTCTGCTTCCTCTGCAGTTTCAGCTCAAGCATCTGAACTTTACGAT GATGCAACCACTTCATTTGTTGACATGACAACAGAGACACCTCCAAATCATGAGATAGATGCAGAGGAGAGAAGTGTGGACCCTCCAGCATCAAGAGTCT CACCTCGGGGAAATCAGTTACGTATTCCAGGATCCTTGATTTGTTCACCTGAACCTTCTAATGGCCAATCGGATGCCAATAATGCAAATTCTTCCACCAA TGCTGGTAACCTGATGTCAAATTCAGCTCTGCATTTATCATTTCCGGTCACTGAAGATATGACCATCCGCAAGGAGGATATTCTTGAAAGCCAGCCCTGT AATGCACCTGCTACGGTACATGGAGGATCAAATGGTATTACTTCTCCATCTAGACATGGTGACGACAAGTTCACAGTGACGGAACTTCTATCCGTTTCAG AGGCTGCTGGTATTTCTTCACCTCTCTCGCCAATTTCTGCTCCTCAAAGTTACCCACATCCAGCTGAAAAGGATGATGCTAATGATACTCCAGCTGGCTG TCCTCCTCCTTTCGACGATGTCATACACGTCATTCGCCACAGCAGTTTCCGCGTAGGGAATGACCAACCTGTCATGGAAACCGTCGAGATGGGAGGAAGT GGAGGAAGTCAAAACATCGATTTTGGGAAACTGATGAACGTAGTGAGAGATGAACTGGATTTGAGAAATGGTGCTCCTCCACTGACACTTAAATCAGCTG GTGAATCCGAATCTTCAAGTCTGACCGAAATGGAGGACACGAAAGTTCAGACCACTTCTCATACAACACCGGAACCGATGAAACCCAGTACTCCTCTCAA AGAAGCAGAAGAGGCATCATCATCTCCTGCAGGTAGTACAAACACGAACGAAATTCTGGACGTGAAGTCGTTTCGACAGCGAGCTGAGGCGCTGGAAGGA CTACTCGAACTATCTGCAGACCTGCTACAAAGCAACAGACTGGAAGAACTCGCAGTTGTCCTAAGGCCATTCGGGAAAGACGCGAAGGTGTCTCCGAGGG AGACAGCTATATGGTTGGCCAAGAGTCTGAAAGGAATGATGATTGATGACAGTGGCCGGAGTTCATCATCTTGA
AA sequence Show only first row Show all	>Lus10001857 pacid=23158787 polypeptide=Lus10001857 locus=Lus10001857.g ID=Lus10001857.BGIv1.0 annot-version=v1.0 MDQYEIMEQIGRGAFGAAILVHHKVEKKKYYTQSSVLLYVLKKIRLARQTERCRQSAHQEMALIARIQHPYVVEYKEAWVEKGCYVCIVTGYCEGGDIAE LMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLTDIPYGFKSDIWSLGC CMYEMAAHRHAFKAFDMAGLISKINRSSMGPLPSCYSPSLKSLIKCMLRKNPEHRPSASEVLKHPYLQPYVEQYRSSFSPPICSADRRLSASRANKKSMA ESQSSNSSSSDRDSYLSSKRNISAVASNCKNKGTDTDLASVDDEDDNDTEQATSGEGEHHRTVHTEKINERKAMKFNHEENGSNVESKQPNAIRSIMIAL KEGKARENGSPLRGARPKAVGVMTPRSNTEPLSRIPKPTAIAPSLKNNVDAPTAAQAKFGFESMKRIQGSNPSKHQLPVPDSSPKTKPRNDGIPPSFPVK NIGEGLAAKSRLRTPPSNIVRRCSFPGPNRQGGSDLPTDVSGMTKSPPNTSRKVPDLQFTHFTKEVKQEKAAGGVSRVSQTDSSNSASSAVSAQASELYD DATTSFVDMTTETPPNHEIDAEERSVDPPASRVSPRGNQLRIPGSLICSPEPSNGQSDANNANSSTNAGNLMSNSALHLSFPVTEDMTIRKEDILESQPC NAPATVHGGSNGITSPSRHGDDKFTVTELLSVSEAAGISSPLSPISAPQSYPHPAEKDDANDTPAGCPPPFDDVIHVIRHSSFRVGNDQPVMETVEMGGS GGSQNIDFGKLMNVVRDELDLRNGAPPLTLKSAGESESSSLTEMEDTKVQTTSHTTPEPMKPSTPLKEAEEASSSPAGSTNTNEILDVKSFRQRAEALEG LLELSADLLQSNRLEELAVVLRPFGKDAKVSPRETAIWLAKSLKGMMIDDSGRSSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	0	1
AT5G56890			Protein kinase superfamily pro...		Lus10027635 [exp]	2.2	0.8370
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	8.5	0.8039
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	9.3	0.8142
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	13.9	0.8170
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10025081 [exp]	14.4	0.8108
AT3G12020			P-loop containing nucleoside t...		Lus10029307 [exp]	15.7	0.7289
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	19.6	0.7478
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	23.5	0.7498
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	26.7	0.7196
AT1G16860			Ubiquitin-specific protease fa...		Lus10033374 [exp]	27.0	0.8062

Compare expression of checked genes

Lus10001857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.