Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25660 1260 / 0 EMB2410 embryo defective 2410 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012415 [exp] 292 / 6e-87 AT2G25660 350 / 2e-106 embryo defective 2410 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034700 [exp] 1451 / 0 AT2G25660 2951 / 0.0 embryo defective 2410 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001859 pacid=23169988 polypeptide=Lus10001859 locus=Lus10001859.g ID=Lus10001859.BGIv1.0 annot-version=v1.0 ATGGGGTCGGAACTCCATTCCCCATTTGTTGGGATTCCAGTTTCTGGCTCTCTCAAGCCTGGAAACAACGTCTGTATAACACCACATTTGGTTGGGGTTA GGAAACGGAGGAGGCTACGTTACACATGTGTCCGATCCAGGAAACATGACGAATGGATGGCACATGCAGTTAGGTTTTCCAATTTCTGTGGTAGAAACGT AGAGTTGTTGAGGAAAGCCATAAGCTCAAGAAATGGGTTGAAAGTAGACTGTGTGGAGGAGCCTTTTGCTCGAAGCAAGGCCTTCGTGAGGTCCCTGTCC CCTCTGTGGCAAGAAGGGTTGCTCATTGTGAGATGCTCTGCTTTTATAACTGTGATTTCTGGGGTTTTCTTGCTGGTATGGTATGGGCGGAACAAAGCCA AGGGTTATGTAGAGGCCAAGCTTTTGCCTTCTGTTTGCTCTATGATCAGTGAATATATCGAGCGTGATGTTTATTTTGGCAAGGTTCGAGGAATTTCTCC TTTAAGCATTACGCTGGATTCCTGCTCGATTGGGCCACACCGTACCGAATTTTCTTGTGGTGAGGTGGCTACTATGAAGCTTCGTGTTCGCCCCTTGGCA AGTTTGAGTAGAGGTAAGATTGTAATTGACGCAGTGCTCTCTCATCCTACTGTATTGGTCGCGCAGAAGAAAGATTTCTCCTGGTTGGGTATCCCCCCAA CTGATGGTTTTAGTATGGAAAGGTACTTATCCACTGAGGATGGAATTGATTATCGCACAAAGGTTAGGAGGTTGGCACGAGAGGAATTAGCTTCTCAGTG GGCCAGGGAACGTGACAATAATGCTAAAGAAGCTGCAGAGAAAGGTTATCTTGTTCCTGATCATGAGTCCAGTCAGTATGAAGATGGTGTGTTAAAACAG AATCCAGCTCCTTTATCAGATGTACCATCTGGATCTCTCTCTTGTGTGGATGATAAGCTGCATTGGAGAGACCATCACTCTGTTGACATTGGTATTGATT ATGATTTGAAGCATGCTGACCTTGAGAATTCATTCGGTAGAAGTTCAAGTCGTGAATTTTCGAACCAAGTCATCAAAGGTCCTAGAAGAAAGTTCAAAAA GGAGTATTCTGATGATATTGACAGCACAGTTGTTGGTATGAGTGCCAAAAGAAGAATCCTGGAGTGCAGTGCGTCTGCAGCAACGGTATATTTTCAAAGA TTATCTAATGAGAAGTTTGATGATCCATCACAGTCACCTGGTAGCTCTGATACAACGGGCTTTGGTAACTTTTTAGTGCCAAGTATAGAAGCAGATAATA GGTATGTTGATGTTTCTTCTGACGTGAATAGGAGTAGTGGAAATCTTGCAGATAAAATCCGAAGTGTGGATAAGAGTGATGATTCTGGAAGTGAGCCTTC TACAGGTAGAGAAACTACTATATGGAAATTAGACGACTTCAACCTCTTGCATGATCCATTTCTGATGACTTTAAGTAGACTTATGGCAGTAGTAAAGATT TGTGAAAAACACCCTGCTGCTTTCGTGAGCACAAAAATTAGCATTGAAGACAACAAAGATTCAATGGATGGTGCTACAATTGGACAGAACAATACTGATC CACATAAGAATTCAAATGGTCCTCCTGCATCTCAGAATTTGAATTTTGAAACTGAATCTTCAGTTTTGCATCCAGTTCCTGTTAGGCCGTTGAGCTTAAA ATCTGTATTACCTTACATCTCAAGATATGTTGTCAACTTCTTGACCCATCCTTTTGTTACTCCCATGAGAAACACAAAGTCAGGTGTTCGCCCAAATGTT GAAGACATACTGGCAGAACTAGTTGATGGAGTAGATATAGTGCATACTGAAGGAATTGAGAAGAAGCTTCCTGTTTCCCTAGATTCTATTCATTTTAAAG GGGGAAGTCTGATGCTAATTGCTTATGGTGATCAAGAACCTAGAGAGATGGAGAATGCTATTGGACATGTGAAATTTCAAAATCACTATACACGAGTAAA TGTTCAGTTGAGTGGCAATTGCAAGATGTGGAGATCCGATGCATTGTCTGATGATGGAGGCTGTTTGTCTGTTGATGTTTTTGTTGACAATATCGAGCAG AAATGGCATGCCAATTTGAAAATATCAGACCTTTTTGCTCCTCTTTTTGAAAGGATCTTAGAGATACCGATCAGTTGGTCCAAAGGTAGAGCCTCTGGTG AGGTCCACTTGTGCATGTCTAGAGGAGAAACATTTCCCAATCTTCACGGACAACTTAATGTGACAGGATTAGCATTCCAAATATTTGATTCTCCATCTTG GTTCTCCGACATAGCAGCCAGTTTATGTTTCCGTGGTCAGCGAATATTCTTGCATAATGCTAGTGGCTGGTTTGGCGATGTTCCTTTAGAAGCTTCTGGA GATTTTGGCATTCATCCAGAGGAAGGGGAGTTCCATCTGATGTGTCAGGTTCCGTCTGTTGAAGTTAATGCACTGATGAAATCTTTTAAGATGAAACCTC TTTTATTTCCGGTGGCAGGGTCTGTAACGGCTGTATTTAACTGTCAAGGACCCTTGGATGCTCCTGTGTTTGTTGGAAGTGGAATGGTCTCGAGAAAGGT ATCTCATTCTGCCTTAGGTGCTCCTGTATCTGCTGCATCTGAAGCAGTGTTAAAAAGCAAGGAGGCTGGTGCTGTGGCTGCATTTGACCGTGTCCCATTT TCGTATGTATCAGCTAATTTCACGTTCAACACTGATAATTGTGTGGCTGATTTATATGGAATCAGAGCTAGCCTTGTAGATGGTGGAGAGATTCGAGGGG CTGGCAATGCATGGTTATGTCCAGAGGGTGAGGTGGATGATAGGGCAATGGACGTGAATTTTTCTGGAAATTTGTCCTTTGACAAAATTATGGATCGATA TATACCAGGTTATCTTCAAGTTATGTCACTGAAGTTAGATGATCTAACTGGAGAAGCAAAGCTTTCAGGATCCCTTTTGAGACCGAGATTCGACATCAAA TGGATTGCACCAAAAGCTGAAGGTTCATTTGTTGATGCTAGAGGGGAAATTGTGATTTCACATGAGTATATCATAATCAATTCTTCATCTGTTGCGTTTG ATTTACTCTCCAAAATTAACACCTTTTATCCCGATGACTGTCAACAAAGGGATGGATGTGATGTAAAGAGTCATGTGCCTTTTACTGTTGAAGGAGTTGA ATTAGATCTGCGAATGCGTGGGTTTGAGTTTTTCAGCTTGGTCTCTTCTTATCCATTTGATTCTCCAAGACCTACACATTTGAAAGCTACAGGCAAGATA AAATTTCTGGGGAAGATTGTGAAGCCTTGCACTCCTGCGGAGGAAGATCTTCCTACTGAGAAAAACGTGCATATAAATGTAGGACGGCTCGGAGAATGTC TTGCTGGGGAGGTCTCATTGTCGGGTTTGAGACTAAATCAATTGATGTTAGCTCCACAGCTCTCTGGTCAGTTGAGCATTTCTAGTGACCATATCAAGGC TGAGATTAGGCAATCATTACAGCTCATATCTGACTAA
AA sequence Show only first row Show all	>Lus10001859 pacid=23169988 polypeptide=Lus10001859 locus=Lus10001859.g ID=Lus10001859.BGIv1.0 annot-version=v1.0 MGSELHSPFVGIPVSGSLKPGNNVCITPHLVGVRKRRRLRYTCVRSRKHDEWMAHAVRFSNFCGRNVELLRKAISSRNGLKVDCVEEPFARSKAFVRSLS PLWQEGLLIVRCSAFITVISGVFLLVWYGRNKAKGYVEAKLLPSVCSMISEYIERDVYFGKVRGISPLSITLDSCSIGPHRTEFSCGEVATMKLRVRPLA SLSRGKIVIDAVLSHPTVLVAQKKDFSWLGIPPTDGFSMERYLSTEDGIDYRTKVRRLAREELASQWARERDNNAKEAAEKGYLVPDHESSQYEDGVLKQ NPAPLSDVPSGSLSCVDDKLHWRDHHSVDIGIDYDLKHADLENSFGRSSSREFSNQVIKGPRRKFKKEYSDDIDSTVVGMSAKRRILECSASAATVYFQR LSNEKFDDPSQSPGSSDTTGFGNFLVPSIEADNRYVDVSSDVNRSSGNLADKIRSVDKSDDSGSEPSTGRETTIWKLDDFNLLHDPFLMTLSRLMAVVKI CEKHPAAFVSTKISIEDNKDSMDGATIGQNNTDPHKNSNGPPASQNLNFETESSVLHPVPVRPLSLKSVLPYISRYVVNFLTHPFVTPMRNTKSGVRPNV EDILAELVDGVDIVHTEGIEKKLPVSLDSIHFKGGSLMLIAYGDQEPREMENAIGHVKFQNHYTRVNVQLSGNCKMWRSDALSDDGGCLSVDVFVDNIEQ KWHANLKISDLFAPLFERILEIPISWSKGRASGEVHLCMSRGETFPNLHGQLNVTGLAFQIFDSPSWFSDIAASLCFRGQRIFLHNASGWFGDVPLEASG DFGIHPEEGEFHLMCQVPSVEVNALMKSFKMKPLLFPVAGSVTAVFNCQGPLDAPVFVGSGMVSRKVSHSALGAPVSAASEAVLKSKEAGAVAAFDRVPF SYVSANFTFNTDNCVADLYGIRASLVDGGEIRGAGNAWLCPEGEVDDRAMDVNFSGNLSFDKIMDRYIPGYLQVMSLKLDDLTGEAKLSGSLLRPRFDIK WIAPKAEGSFVDARGEIVISHEYIIINSSSVAFDLLSKINTFYPDDCQQRDGCDVKSHVPFTVEGVELDLRMRGFEFFSLVSSYPFDSPRPTHLKATGKI KFLGKIVKPCTPAEEDLPTEKNVHINVGRLGECLAGEVSLSGLRLNQLMLAPQLSGQLSISSDHIKAEIRQSLQLISD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	1.0	0.9842
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	2.0	0.9840
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014157 [exp]	2.4	0.9729
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	3.5	0.9763
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	3.9	0.9805
AT5G24350			unknown protein		Lus10022371 [exp]	4.1	0.9636
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	4.2	0.9636
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	4.5	0.9684
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	5.7	0.9697
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	6.3	0.9729

Compare expression of checked genes

Lus10001859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.