Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25660 1546 / 0 EMB2410 embryo defective 2410 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012415 [exp] 433 / 7e-141 AT2G25660 350 / 2e-106 embryo defective 2410 (.1) Lus10022111 [exp] 295 / 7e-94 AT2G25660 264 / 2e-82 embryo defective 2410 (.1) Lus10012414 [exp] 207 / 5e-61 AT2G25660 167 / 1e-47 embryo defective 2410 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034700 [exp] 1706 / 0 AT2G25660 2951 / 0.0 embryo defective 2410 (.1) Potri.006G246401 [exp] 0 / 1 AT2G25660 0 / 1 embryo defective 2410 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0401 [flax] [poplar] AsmA-like PF04357 [flax] [poplar] TamB TamB, inner membrane protein subunit of TAM complex
Representative CDS sequence Show only first row Show all	>Lus10001860 pacid=23169987 polypeptide=Lus10001860 locus=Lus10001860.g ID=Lus10001860.BGIv1.0 annot-version=v1.0 ATGCTCCCTCTGAGATTACAGTTGGATGCCACGGGTAGGGCAGATGAAAGTCTAGCAGTGGAAGTTGTGGGCCCAGTACGGTCCATTTATGAGGAGAACT CTCCAAATGGAAAGTTACTATCTTTTTCTCTTCAAAAGGGTCAGCTAAAAGCTAACCTGCGCTTCCTACCGATGCATTCTGCTACATTGGAGGTCCGTCA TTTGCCACTGGATGAACTGGAGTTGGCATCATTACGAGGGACAGTCCAAAAGGCTGAAATTCAGCTCAATTTTCAGAAAAGAAGGGGTCACGGACTGTTA TCTGTGCTTCATCCAAAGTTCAGTGGTATTCTTGGCGAAGCTCTAGATGTGGCTTCTAGATGGAGCGGAGACGTTATCACTATTGAAAAAACTGTCCTGG AACAAGCCAATAGCTATTACGAGCTTCAAGGAGAGTATGTGTTACCGGGCACTCGAGACAGAAGCCTATTAGGGAAAGAGAAAGATACCTTGTTTGAACG AGTAATGACTGGTCATCTGGGGAGTGTTATATCTAACATGGGAAGGTGGAGAATGAGACTTGAAGTTCCTCGAGCGGAGGTTGCCGAGATGCTCCCACTG GCAAGACTACTCTCACGTAGCACAGATCCTGCTGTTCGCTCGAGATCTAAGTGTCCGAGGACTGATAATGCACCGTTCTTTTTGCAGGACATGTTTATGC AAAGTTTGCAGTCAGTTGGACTGTATCCTGATAGTCTTCAGGACTTGCTAGAGGAAATCGAGGGGCATCATACTGCTCCCAACGAAGTTATCCCTGAGGA GATAAGTCTTCCAGGACTTGCTGAACTTAAAGGTCGTTGGCAAGGTTCTCTCGAGGCAAGTGGTGGAGGCAATGGTGACACAATGGCAGGATTTGACTTT CGTGGGGAGGACTGGGAGTGGGGAAATTACAAAACTCAGCGGGTTCTAGCAGTTGGTGCATACAGCAACAATAAAGGGTTACATCTTGAAAGGTTGTTTA TTCAAAAAGATAATGCTACAGTACACGCCGATGGGACTTTGTTAGGGCCAAAAACCAATCTGCATTTTGCTGTCCTGAACTTTCCTGTCAGTCTAGTTCC TACTTTGGTTCAGGTGATGGAGTCTTCAGCATCAGACACTGTTCATTCATTGAGACAACTTCTAGCTCCAATCCGAGGTATACTACACATGGAAGGAGAT CTGAGAGGAAGTTTGTCAAAACCAGAATGTGATGTACAAGTAAGGCTCTTAGATGGTGCTATTGGGGGCATTGATTTGGGGCGTGCAGAAGTTGTTGCTT CTCTAACTTCAACTAGCCGATTCTTATTCAATGCCAAATTTGAACCGATTGTCCAAAATGGTCATGTTCATATACAAGGAAGTATACCTCTTACCTTTGT GCAAAATAACCTGGAGGAAGAAGATTCAGAGACAGACAACAGCGGAGCAACTTGGTTTCCTGGTTGGTCCAAGGAAAGGGATAAGGGCTCTTCTGACGAC GCCAGTGAAAAGAAATTACTCAGAGATAGAAGTGAAGATGGTTGGAATTCACAATTAGCTGAAAGCCTTAAAGTTTTGAGCTGGAATTTCTTAGATGTGG GAGAAGTCAGAGTTGATGCAGATATCAAGGATGGGGGGATGATGCTGTTGACAGCTTTATCCCCTTACGCAAATTGGGTTCATGGAAATGCTGACATTAT GCTTGAGGTCAGAGGAACTGTTGACCAACCTGTGGTTGATGGGTTTGCTTCATTCCATAGGGCATCTATATCTTCACCCGTTCTGAAGAAGCCACTCACA AATTTTGGCGGGTCAGTACATGTGAAATCAAATCGACTTTGCATCACTTCATTAGAGAGCAGGGTTAGTAGGAAAGGCAAGCTGTCTATTCAAGGCAATC TACCCCTCCGAACAAGTGAAGCATCCATTGATGATAAAATTGACTTGAAATGTGAAGTCCTCGAAGTCCGAGCAAAAAGCATCTTAACCGGCCAGGTCGA TACTCAGATGCAAGTAACTGGTTCCATATTGCAACCCAACATCTCAGGAAACATCAAATTGAGCCATGGAGAAGCATATCTCCCGCATGATAAAGGTAGT GGAGCTAGTTCATTCAATAGGCTAGCTTCGAATCAGGCTAGACTTCCTGGTGGAAGCATCAATCGGGCAGCTGCTTCTAGATATGTATCCCGATTTTTTG GTTCCGAACCTGATGCTGCAACCAAGTTTTCACAAAGCACTGTTAAATCAACTCAAGATGAGAAGGATTTGGAGCAAGTAAATATGAAACCTATAGTTGA TGTTCGCCTCAGTGATTTGAAGCTTATGCTGGGACCAGAGTTAAGGATTGCTTATCCTTTGATTATGGATTTCGCAGTCAGTGGGGAGCTGGAGCTAAAT GGTCCAGCTCATCCCAAGTTGATTAAACCTAGAGGCGTTCTGGCATTTGAAAACGGGGATGTTAATCTTGTTGCAACTCAAGTGAGGCTGAAACGGGAGC ATCTCAATATTGGAAAATTTGAGCCTGAGCATGGTTTAGATCCTATGCTGGACTTGGTTTTGGTTGGATCAGAGTGGCAATTCAGAATCCAAAGCAGAGC CAGCAATTGGCAGGACAAGCTGGTGGTAACCTCCACCCGATCCATGGAGCAAGACGCTCTCTCCCCTACGGAGGCTGCTAGAGTATTTGAGAGCCAATTG GCAGAATCCATATTGGAGGGTGATGGGCAACTTGCGTTTAAGAAGCTAGCTACTGCAACTCTTGAATCACTTATGCCGAAAATTGAAGGGAAGGGAAAAC TCGGGCATGCCAGATGGAGGCTAGTTTATGCTCCACAGATCCCAAGTCTACTCTCTGTAAATCCCATGGTTGATCCTTTGAAGTCTCTAGCCGGTACCAT ATCCTTTGGTGCAGAAGTTGAGGTCCAGCTCGGGAAACGCCTCCAGGCTTCCATTGTTAGGCAGATGAAAGACTCAGAAATGGCTATGCAATGGACATTG ATCTATCAGCTCACAAATCGGCTGCGAGTGCTGCTTCAGTCTGCTCCTTCCAAACGCCTTCTCTTTGAGTACTCTGCAACCTCGCAGGACTAG
AA sequence Show only first row Show all	>Lus10001860 pacid=23169987 polypeptide=Lus10001860 locus=Lus10001860.g ID=Lus10001860.BGIv1.0 annot-version=v1.0 MLPLRLQLDATGRADESLAVEVVGPVRSIYEENSPNGKLLSFSLQKGQLKANLRFLPMHSATLEVRHLPLDELELASLRGTVQKAEIQLNFQKRRGHGLL SVLHPKFSGILGEALDVASRWSGDVITIEKTVLEQANSYYELQGEYVLPGTRDRSLLGKEKDTLFERVMTGHLGSVISNMGRWRMRLEVPRAEVAEMLPL ARLLSRSTDPAVRSRSKCPRTDNAPFFLQDMFMQSLQSVGLYPDSLQDLLEEIEGHHTAPNEVIPEEISLPGLAELKGRWQGSLEASGGGNGDTMAGFDF RGEDWEWGNYKTQRVLAVGAYSNNKGLHLERLFIQKDNATVHADGTLLGPKTNLHFAVLNFPVSLVPTLVQVMESSASDTVHSLRQLLAPIRGILHMEGD LRGSLSKPECDVQVRLLDGAIGGIDLGRAEVVASLTSTSRFLFNAKFEPIVQNGHVHIQGSIPLTFVQNNLEEEDSETDNSGATWFPGWSKERDKGSSDD ASEKKLLRDRSEDGWNSQLAESLKVLSWNFLDVGEVRVDADIKDGGMMLLTALSPYANWVHGNADIMLEVRGTVDQPVVDGFASFHRASISSPVLKKPLT NFGGSVHVKSNRLCITSLESRVSRKGKLSIQGNLPLRTSEASIDDKIDLKCEVLEVRAKSILTGQVDTQMQVTGSILQPNISGNIKLSHGEAYLPHDKGS GASSFNRLASNQARLPGGSINRAAASRYVSRFFGSEPDAATKFSQSTVKSTQDEKDLEQVNMKPIVDVRLSDLKLMLGPELRIAYPLIMDFAVSGELELN GPAHPKLIKPRGVLAFENGDVNLVATQVRLKREHLNIGKFEPEHGLDPMLDLVLVGSEWQFRIQSRASNWQDKLVVTSTRSMEQDALSPTEAARVFESQL AESILEGDGQLAFKKLATATLESLMPKIEGKGKLGHARWRLVYAPQIPSLLSVNPMVDPLKSLAGTISFGAEVEVQLGKRLQASIVRQMKDSEMAMQWTL IYQLTNRLRVLLQSAPSKRLLFEYSATSQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	0	1
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	1.0	0.8290
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	3.5	0.8159
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	4.5	0.7927
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	6.9	0.7904
AT1G03370			C2 calcium/lipid-binding and G...		Lus10003910 [exp]	7.5	0.7758
AT2G36360			Galactose oxidase/kelch repeat...		Lus10034159 [exp]	7.5	0.6789
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	7.7	0.8092
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	8.2	0.7947
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	10.8	0.7335
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	11.7	0.7752

Compare expression of checked genes

Lus10001860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.