Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11450 339 / 1e-115 PPD5 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022110 [exp] 529 / 0 AT5G11450 340 / 2e-117 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10012413 [exp] 189 / 3e-59 AT5G11450 135 / 3e-40 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10030326 [exp] 53 / 2e-07 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10007183 [exp] 42 / 4e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246500 [exp] 409 / 5e-143 AT5G11450 352 / 2e-122 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10001861 pacid=23169985 polypeptide=Lus10001861 locus=Lus10001861.g ID=Lus10001861.BGIv1.0 annot-version=v1.0 ATGGAAACTGGAGCACAAGGTTTGCACCATCCCGAAGATACTCAAACGAACCTTGGTGTGATACCAAAGATGGGATGGATATGTGAGCTGACGGGAAACC TCACTTCAGCTCAGGAGCTAGCTGAACTAGCTAGCATCAGCTCTTCGGCATCAAATAGCATAATTGCGGTTCCAAGGAGCCAAAATGAAGTGTTAAACAA TACCTGGTTAAATGACTGGTTTACACAACACGCTCTGCGGTGTTGTTTTAATCGCAAAATAATACCAAAACCAGCAACGGATGAGGTGAACAAAGTAGAA CTGGTACTGAAAAGTGAAGGAAGCTCGAGAAGCATAGCAATGGCGCTTCTCTGCTCGCCTACTCTGTTTGCTACCCGATATCAACAGCTCTCCTTCTTTA GGAGTGAGAGCAGCGTGTCGCTGAACCAGAGGAAATGCTCTTGTAGTGCTTCTTCTCCATCATCATCATCTTCTTCTTCGTCGTCTTCAAGACCCAGTCC GGAAATTGGGGTTTTGAGAAGGGATTTGATGGTGTTCGGTCTCTGTTCTTCTTTATCTGTGGCGGCTTTGCCGTTTTCAGAGTGTCTGGCAGAAGATGAT CTGAAATTGGGTTCAATGGTTGATGAGATTAATGCATACAGTTACTCATATCCAGTGGAATTGCAATCCAAGAAGTTTGCCTTTAAATGGGCGGAATCCA GAAAGCCAGAACGGTATTCATCAGCTGCTCCATTGTCCCCTGATGCTCGGCTTCGGATTGTGTCGGAGCGTGTTGATTTCATTGACAACCTCATCATTTC TGTTTCGATAGGCCCCCCAAATGTTCAGTTCATAAAATCAAAGGACAAGAGTGCCTGGAACGCAAGAGATGTTGCTGACTCTGTTTTGTCTGACAAGTCT ACTCTGCGAGTCACGTCAAGTCAGCGACTGGCAGAGAGTTCTCTTCTTGATGCACATAAAACGGAAGTTGATGGGGAACCTTACTGGTTCTACGAGTATC TGGTTCGCAAGTCACCTACTAAAGATGTTCAAGAATACCGCCATTATGTTGCGTCAACAGCTGAACGAGATGGATACCTCTACTCGTTGAGTGCTTCCAC TCTTAACAGAGAGTGGGGAAAGATGGGAGATGTGTTGGAGAGAACTGTATCCTCATTTCGGCTTCTGCCTCCCACAGCTGAATATGTACCTCCATTCAAA GACCCTTGGAGATTTTGGTGA
AA sequence Show only first row Show all	>Lus10001861 pacid=23169985 polypeptide=Lus10001861 locus=Lus10001861.g ID=Lus10001861.BGIv1.0 annot-version=v1.0 METGAQGLHHPEDTQTNLGVIPKMGWICELTGNLTSAQELAELASISSSASNSIIAVPRSQNEVLNNTWLNDWFTQHALRCCFNRKIIPKPATDEVNKVE LVLKSEGSSRSIAMALLCSPTLFATRYQQLSFFRSESSVSLNQRKCSCSASSPSSSSSSSSSSRPSPEIGVLRRDLMVFGLCSSLSVAALPFSECLAEDD LKLGSMVDEINAYSYSYPVELQSKKFAFKWAESRKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVSIGPPNVQFIKSKDKSAWNARDVADSVLSDKS TLRVTSSQRLAESSLLDAHKTEVDGEPYWFYEYLVRKSPTKDVQEYRHYVASTAERDGYLYSLSASTLNREWGKMGDVLERTVSSFRLLPPTAEYVPPFK DPWRFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	0	1
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10005719 [exp]	2.4	0.9798
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	2.6	0.9799
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	3.0	0.9790
AT2G30695			unknown protein		Lus10004790 [exp]	3.6	0.9677
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	4.9	0.9782
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10041553 [exp]	5.5	0.9768
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	5.8	0.9669
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	6.0	0.9667
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	7.1	0.9692
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	7.3	0.9627

Compare expression of checked genes

Lus10001861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.