Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54130 813 / 0 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 792 / 0 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT4G02260 209 / 4e-57 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT3G17470 147 / 4e-37 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022102 [exp] 1063 / 0 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 956 / 0 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 945 / 0 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 186 / 1e-50 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10002139 [exp] 159 / 5e-40 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10011252 [exp] 130 / 1e-34 AT1G54130 87 / 5e-20 RELA/SPOT homolog 3 (.1) Lus10028191 [exp] 120 / 4e-28 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 99 / 3e-21 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10008755 [exp] 70 / 2e-12 AT1G54130 72 / 1e-13 RELA/SPOT homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168200 [exp] 979 / 0 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 969 / 0 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.014G126700 [exp] 215 / 9e-59 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.013G089000 [exp] 177 / 3e-46 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.010G002400 [exp] 139 / 2e-34 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10001862 pacid=23169984 polypeptide=Lus10001862 locus=Lus10001862.g ID=Lus10001862.BGIv1.0 annot-version=v1.0 ATGGCGGGGGCGGCGAATGCTGTTTACGTGCGCGCTCCCGGGCGCTTGAGTTCTCTACGCCACACACTCGTTTCCACCCCACATTCCTGCACGATTAACG GTAACTCTAGCTATGATTTCGACCCCAATTCCCGATCCTCCTCGTCTACTGCTTCTTCTTCTCACAAGTCGCGTATTGGGGGGCTAACCTGCCTCTTCTC CTCTCCCGGTGCCAAGCACTCCTCCTTCTCAGGCGATCGGGAGGAGTTGGGGGCTCTCTGGCATGATAGAGGGGACGATTTGACCACTTCGTTTCGCTAT TCCCCCTCCAAGTACGTCGGTGGTGGATCCTCTTCCGTAAAGAAGGATCAAAGTCCGGTTTCTGTATTGCAGGTTCCTGTCTCATGTTCTAGCAGTCCTC CCACGAGCCTAGCTCGTGAGAGGAATGCTGGCGATGTCTGCTTCCACGGCTCGTTTCGTAATGGGGGTAACCGGTTGTTTGATCGCTTTGTCAGCCACGC GTTAGGCTCTTCTTGTGTTGACTACGATTCGCCAAGCTTTGAGGTTCTTCCTGCTGATGTTGATGTGGTTCTAGCTCCTCCTTGTGTGGATGAGTTGACG TTTAATATGGAGGATAGCTTTGTCGATCCTGGTTATGAGCCTTATGCCAAGGAATTGTTGCTCGGTGCTCAGTTGAGGCACAAAATCTTTTGCCAGGATT TCGTGATCAAGGCTTTTAACGAGGCTGAGAAAGCTCATAGAGGACAGATGCGGGCGAGCGGTGATCCTTACCTGCAGCATTGTGTGGAAACTGCTGTGTT GCTTGCAACTATCGGTGCGAACTCCACCATGGTTGCTGCTGGGCTTTTACACGATACTATTGATGATTCTTTCTTAAGTTACGACTATATTTTCAGGACC TTCGGTGCTGGTGTAGCTGATTTGGTTGAAGGGGTGTCAAAACTTAGTTACTTGAGTCAGCTTGCGCGCGAGAACAATACTGCTAGCAAAACTGAGGAGG CAGATCGGTTGCATACAATGTTTCTAGCTATGGCAGATGCCAGAGCTGTACTGATTAAGTTAGCTGATCGATTGCACAACATGATGACCCTAGATGCATT GCCTTTGCCAAAGCAACAGAGGTTTGCGAAGGAGACTTTGGAAATCTTTGGTCCTTTGGCTAACCGCTTAGGGATCTCTGCATGGAAAGAACAGCTTGAA AATTTGTGCTTCAGGCATCTGAATCCTGACCAGCACAAAGATTTGTCATCCCAGCTCGTAAAATCTTTTGATGCGGCAGTGATTACTTCCGCAACAGAGC AATTGGACCATGCCTTAAAGGAAGAAGCTATATCTTATCATGTGCTCTCTGGTCGACATAAAAGTTTATATAGCATATATCGCAAAATGTTGAGAAAAAA GCTGAAGAGGGATGAGATCCATGACATTCACGGGCTTCGTTTGATTGTGGAAAGTAAGGAAGACTGCTACAGGGCATTAAGAGTTGTTCATGAGTTATGG CCTGAAGTGTCTGGAAAGTTCAAGGACTACATAAGTCACCCTAAGTTCAATGGGTATCAATCTCTCCACACAGTAGTCTTGGGTGATGGAGAAGTTCCAC TTGAAGTCCAGATCAGAACGAAGGCGATGCATTTGCAGGCCGAATTCGGATTTGCTGCTCATTGGAGGTACAAAGAGGGTGATTGCGAGCACCCTTCATT TGTACTGCAGATGGTTGAATGGGCTCGATGGGTCGTGACTTGGCAATGCGAGGCCATGAATAAAGACCGGTCGGCGATCTCTTGCGTTGATTCTACAACT CCTTGTGCATTCCCCGTTCATTCCGAAGATTGCAAATATTCTAGTAAACCTAATTGCAGCCTGGATGGGCCAGTATTTATCGTTATGATGGAGAACGATA AGATGTCAGTACAAGAGCTTCCAGCAAACTCGTGTGTGATGGACCTGCTGGAAAGAGCTGGTGGAGTTGGCAATACCTGTTCACCATACTGCTTCCTCCA CATGAAGGATGAATTGAGGCCGAAACTTAACCATGTTCCTGTGAGTGATCCCAGCTGCAAGCTGAAGATGGGAGACTTGGTGGAGCTAAGCCCTGCAATA TCTGAGAATTCACTAACCGATTACAGAGAGGAGATTCAGCGTATGTACAACAGGGGGCTCACTGGCGTTTCAAGCACAGCCACTGGAGTTGCGAAAAAAG TTGCAAGTTTCTTCCGTGTGTATAATTGGGGAACTGTTCTGACTTGTGGAACAGTGGCTAGCTCTCAGTCAGTCAAAAGATCACTCTTCAACTATGACTC TGAATCACTGAATTGA
AA sequence Show only first row Show all	>Lus10001862 pacid=23169984 polypeptide=Lus10001862 locus=Lus10001862.g ID=Lus10001862.BGIv1.0 annot-version=v1.0 MAGAANAVYVRAPGRLSSLRHTLVSTPHSCTINGNSSYDFDPNSRSSSSTASSSHKSRIGGLTCLFSSPGAKHSSFSGDREELGALWHDRGDDLTTSFRY SPSKYVGGGSSSVKKDQSPVSVLQVPVSCSSSPPTSLARERNAGDVCFHGSFRNGGNRLFDRFVSHALGSSCVDYDSPSFEVLPADVDVVLAPPCVDELT FNMEDSFVDPGYEPYAKELLLGAQLRHKIFCQDFVIKAFNEAEKAHRGQMRASGDPYLQHCVETAVLLATIGANSTMVAAGLLHDTIDDSFLSYDYIFRT FGAGVADLVEGVSKLSYLSQLARENNTASKTEEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLPKQQRFAKETLEIFGPLANRLGISAWKEQLE NLCFRHLNPDQHKDLSSQLVKSFDAAVITSATEQLDHALKEEAISYHVLSGRHKSLYSIYRKMLRKKLKRDEIHDIHGLRLIVESKEDCYRALRVVHELW PEVSGKFKDYISHPKFNGYQSLHTVVLGDGEVPLEVQIRTKAMHLQAEFGFAAHWRYKEGDCEHPSFVLQMVEWARWVVTWQCEAMNKDRSAISCVDSTT PCAFPVHSEDCKYSSKPNCSLDGPVFIVMMENDKMSVQELPANSCVMDLLERAGGVGNTCSPYCFLHMKDELRPKLNHVPVSDPSCKLKMGDLVELSPAI SENSLTDYREEIQRMYNRGLTGVSSTATGVAKKVASFFRVYNWGTVLTCGTVASSQSVKRSLFNYDSESLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10001862 [exp]	0	1
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10018865 [exp]	1.7	0.8726
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	2.0	0.8638
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	6.0	0.8580
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	6.0	0.8437
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021943 [exp]	7.2	0.8404
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	11.0	0.8458
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	17.3	0.8422
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	21.0	0.8313
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	23.5	0.8248
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	26.5	0.8286

Compare expression of checked genes

Lus10001862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.