Plant FIBer expression Database

Lus10001865 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38060 51 / 1e-08 unknown protein
AT5G65480 46 / 1e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032845
[exp]
314 / 2e-111 AT4G38060 76 / 7e-18 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G106300
[exp]
218 / 3e-73 AT4G38060 62 / 1e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10001865 pacid=23149327 polypeptide=Lus10001865 locus=Lus10001865.g ID=Lus10001865.BGIv1.0 annot-version=v1.0
ATGGCCGTGGCATTTACAAATTTTTCACAGTGGTTATGGAGTGGAAAGCCTCGAGAGCCCAGAATCACCAATGGATCATCTTTAACTGTGAAGCAGGACG
CTGATGTGTTGGAGTCGGATATGCTGAGATTTCCATTGGCCAAGGGTCGAGGTATGGCTTCGTCATCTAGAAGGGTAAAGAGAAAATGGCATAGTAGGGA
AGAAAGGAAAATTGATAGGGAGTATGATGTAGTTCTTGTGCCATCTGATGGCGGTTGTGTTTCTGGTTCGGAATCTGATGATTCTGATTATTCAATTGGG
TGGTTGGAGCCTCATGGACCTGATTTCCAAAGTGACCAAGACAATGATGACAGTTTTGCTGTTCTGGTCCCATGTTATGGGCATGTTCAAGGTAAAGAGT
TTCAGGATTCGTCACAAAATGGAATTGGTGCCACTGTCAACATTCCAGACGGCTTTTCTCAAGGTAGCAAGCAATATATAGAACAATGGCTCTCTTTACT
CAGGAATGGCTGA
AA sequence
>Lus10001865 pacid=23149327 polypeptide=Lus10001865 locus=Lus10001865.g ID=Lus10001865.BGIv1.0 annot-version=v1.0
MAVAFTNFSQWLWSGKPREPRITNGSSLTVKQDADVLESDMLRFPLAKGRGMASSSRRVKRKWHSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSIG
WLEPHGPDFQSDQDNDDSFAVLVPCYGHVQGKEFQDSSQNGIGATVNIPDGFSQGSKQYIEQWLSLLRNG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G38060 unknown protein Lus10001865
[exp]
0 1
AT3G18820 RAB71, AtRABG3f... RAB GTPase homolog G3F (.1) Lus10042328
[exp]
3.3 0.9074
AT4G38360 LAZ1 LAZARUS 1, Protein of unknown ... Lus10003321
[exp]
6.5 0.9054
AT3G18620 DHHC-type zinc finger family p... Lus10013426
[exp]
15.5 0.9046
AT3G07370 ATCHIP, CHIP carboxyl terminus of HSC70-int... Lus10025884
[exp]
20.6 0.8963
AT3G14075 Mono-/di-acylglycerol lipase, ... Lus10015680
[exp]
20.9 0.8935
AT4G35110 Arabidopsis phospholipase-like... Lus10042396
[exp]
21.4 0.8985
AT3G05010 Protein of unknown function, t... Lus10018985
[exp]
21.4 0.8694
AT3G09830 Protein kinase superfamily pro... Lus10026524
[exp]
21.7 0.8531
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Lus10025690
[exp]
23.2 0.8814
AT5G57860 Ubiquitin-like superfamily pro... Lus10035816
[exp]
23.4 0.8475

Lus10001865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.