Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58210 282 / 8e-81 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT1G09720 261 / 6e-75 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 234 / 2e-65 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 223 / 1e-61 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 98 / 2e-20 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 92 / 7e-19 kinase interacting (KIP1-like) family protein (.1) AT4G14760 89 / 1e-17 kinase interacting (KIP1-like) family protein (.1) AT4G02710 87 / 2e-17 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 77 / 1e-14 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT2G47920 69 / 9e-13 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032844 [exp] 1326 / 0 AT1G58210 280 / 4e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10025717 [exp] 239 / 3e-66 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 237 / 1e-65 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 226 / 6e-62 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10012730 [exp] 224 / 4e-61 AT2G22560 430 / 9e-134 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 96 / 5e-20 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 84 / 4e-16 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 84 / 4e-16 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 82 / 2e-15 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106400 [exp] 332 / 2e-100 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.007G011300 [exp] 256 / 1e-72 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 253 / 2e-71 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 95 / 4e-20 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 96 / 7e-20 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 94 / 2e-19 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 94 / 2e-19 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 84 / 2e-16 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 84 / 2e-16 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G207700 [exp] 79 / 3e-15 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10001866 pacid=23149328 polypeptide=Lus10001866 locus=Lus10001866.g ID=Lus10001866.BGIv1.0 annot-version=v1.0 ATGGAGGACAAAGTGGGACAAATGCTATCAATCATCGAGAACGAAGGAGACAGCTTCACCAAGCGAGTCGAAATGTACTATAAGCAACGTCCCGAGCTCA TCAACCACGTCGAAGACTCCTACCGCGCCTACCGCGCACTCGCCGAGCGTTTCGACCATTTATCCAAAGACCTCCAGAGCGCAAATCGCACAATCGCCAC CGTCTTCCCTGACTCCGTCCAATTCTCCGATGACTTCTACTCCGACGACGGCGGCGGCGGCACTCCTTTTACACCTCCCATCCATGATGACGACCCGGCC AATGCTCCGAAATTACCGAAAAAGATGCTCAGGACACAATCCACAATTCACGGCCAGAATCAAAGGCCGCCTTCAGCTCCTCTCCTCACACGATCTACAA CCTCCTTCCCTGGTACGACGCCATCGGTGCTAAGATCATCGGGCCTTACGAAAGAGGAGGCTTTGGAAGAGATAGAGAGGCTGCAGAAGGAGATCCTTTT GCTCCACACCGAGAAGGAGTTTGTTGTGAGCATCCGGGAGAGGTGCGATTCCAAATGCGAGAAAATCGAGGATAAAGTTGTTGAGATTCAGGAGAGGATT CAGAAGCTTCAGGATGAGTTTGATATCAGCAACGTCCTGGACGACGGGGAAGCAAGAGGGTTGATGGCTGCCACGGCTTTGAAATCATGTAAAGACGCGT TGGTTAAGCTGAAGGAGAAGCAGGATCGGTGCTTTGAGGATGCCAATTTGGAGACGAAGAAGATTGAAAATGTGCAGAGGAAGTTGAGTCATTTGAAAGG GGAATTATTATTGGACGCCATTCAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGAAAGGGAAAGAGAAAGAGAAAGAGAAAGAGTCAGAG CAGACATCGTCGGTTGTTACGGTGTTGCAGTTGGCAGAGAAGATCGATCAGCTGGTTGAAAAAGTAGCTCATTTGGAAACTGAGGTATCGTCTCAGGGAG CTATGGTTCGCACTTTGAAATGTGATATTCGGAATCTGGAGATCCGAATTACTAAGCTGGAAGAGGAGAAGGAAGCTCTCAAGCACGACTCCGGTGTTGT CAACTCCAAATTTAAGGAGCTTGAGGAAGAAGTGAAACGAGTGAAGCTTCTGAACCGGAGTATCCAGGATCAGAATAGCACTCTCCAGGCTGATTTGGAA GAAGCCAACTCTAAAATCCAGCATTTAAATGATCGGTTGAAGACAGTGGAGCTCCGTAATGAACCGTACAAGAAGAATGAAGAAGAAGAAGAACGTAAAG CAAGTTCGATAACGGCAGAAGAATACTCAAACGTATTGACAAATTACAAGGACGTGAGGAGGAAGCTAGGGGATGTGGAGAAGAAGAGTCAAGATGGTTT CTTCGAATTGTCACTTCAAATCAGGGAACTTAAGAATGCTATCGCAACCAGAGATGAAGAGATTCAATCTCTAAAGAAAACTGGAAACTATTCTCCAGGA GGAGTCAAAGTCTCACCTGAAAGCATTGTAAACACTGGGGGCTATCCTCGATCTGATCCTCCGTCTTACTGCTCCCCTCATCCAGCCTTCAACAATAAGT CCAACAACACTACTAGGAAACAAGATGCTGAATCCTCACCGCTACCTGTCTCTGCGGTGGAGCAGAAGATCCGTTCGGAGATCGACAATCTCCTGGAAGA TAACCTCGAGTTCTGGCTCAGGTTCAGCACTTCATTTCACCAGATCAGGAAGTTTCAGAACTCGATCCAGGACTTGAAAGGTGAATTGGCCACTGTAATG GACAACAAAAGGGTGGATGGAACTGGGAAACTAATTCCCGCCCTCATTCAGGATGCCAGGCCCATCTACAAGCACCTGAAAGAGATTCAGAACGAGCTAA CGATATGGCTGGAGAACAACACGGTGCTCAAGGACGAACTCAACGTCAGGTCTAAGTCATTGTGTGGTATAGAGGGCGAATTGACCCAACTCGAAACAGA GGCCGGGGGAGAGAAGGAGCTGAGCGATTACCAGGCTGCAAAGTTCCTAGGTGAGCTTATGAACATGAAGCAGGAAGGGAGGAAAGTTGAGGAGGAGCTT CTAATGGGTCTCGATAGGGTTAAGGTATTGAAATTCGATATTGATAGGATAGTGGGGCAGTTGGATGAAGAGATTGACTTCATTGCTAACCAGAGGTCCT TCTCCAAGCCCAGGATTCCATTGAGATCCTTCCTCTTTGGTGTGAAGCTCAAGAAGAAGACTTCCATGTTTTCATGTGTTAATCCTCAGCTGGATAGGCA GTTCAGTGATTTAGCACCCAGACCTCTCGACTAA
AA sequence Show only first row Show all	>Lus10001866 pacid=23149328 polypeptide=Lus10001866 locus=Lus10001866.g ID=Lus10001866.BGIv1.0 annot-version=v1.0 MEDKVGQMLSIIENEGDSFTKRVEMYYKQRPELINHVEDSYRAYRALAERFDHLSKDLQSANRTIATVFPDSVQFSDDFYSDDGGGGTPFTPPIHDDDPA NAPKLPKKMLRTQSTIHGQNQRPPSAPLLTRSTTSFPGTTPSVLRSSGLTKEEALEEIERLQKEILLLHTEKEFVVSIRERCDSKCEKIEDKVVEIQERI QKLQDEFDISNVLDDGEARGLMAATALKSCKDALVKLKEKQDRCFEDANLETKKIENVQRKLSHLKGELLLDAIQEEEEEEEEEEEEQKGKEKEKEKESE QTSSVVTVLQLAEKIDQLVEKVAHLETEVSSQGAMVRTLKCDIRNLEIRITKLEEEKEALKHDSGVVNSKFKELEEEVKRVKLLNRSIQDQNSTLQADLE EANSKIQHLNDRLKTVELRNEPYKKNEEEEERKASSITAEEYSNVLTNYKDVRRKLGDVEKKSQDGFFELSLQIRELKNAIATRDEEIQSLKKTGNYSPG GVKVSPESIVNTGGYPRSDPPSYCSPHPAFNNKSNNTTRKQDAESSPLPVSAVEQKIRSEIDNLLEDNLEFWLRFSTSFHQIRKFQNSIQDLKGELATVM DNKRVDGTGKLIPALIQDARPIYKHLKEIQNELTIWLENNTVLKDELNVRSKSLCGIEGELTQLETEAGGEKELSDYQAAKFLGELMNMKQEGRKVEEEL LMGLDRVKVLKFDIDRIVGQLDEEIDFIANQRSFSKPRIPLRSFLFGVKLKKKTSMFSCVNPQLDRQFSDLAPRPLD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	0	1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	3.6	0.9072
AT3G47300		SELT	SELT-like protein precursor (....		Lus10002479 [exp]	3.7	0.8486
AT1G47820			unknown protein		Lus10031924 [exp]	4.0	0.8594
AT1G18060			unknown protein		Lus10041995 [exp]	4.5	0.8910
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10015077 [exp]	4.9	0.8503
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10022903 [exp]	5.5	0.8720
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	6.7	0.8560
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	8.0	0.8472
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	8.2	0.8763
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	11.5	0.8803

Compare expression of checked genes

Lus10001866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.