Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01470 181 / 2e-59 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) AT2G46140 175 / 7e-57 Late embryogenesis abundant protein (.1) AT2G44060 83 / 2e-19 Late embryogenesis abundant protein, group 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010139 [exp] 307 / 5e-109 AT1G01470 182 / 6e-60 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010140 [exp] 226 / 9e-77 AT1G01470 191 / 3e-63 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001876 [exp] 204 / 8e-65 AT1G01470 178 / 3e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10036402 [exp] 193 / 3e-64 AT1G01470 167 / 4e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10007905 [exp] 191 / 2e-63 AT1G01470 170 / 2e-55 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10008337 [exp] 84 / 2e-19 AT2G44060 465 / 2e-165 Late embryogenesis abundant protein, group 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090800 [exp] 206 / 4e-69 AT2G46140 206 / 5e-69 Late embryogenesis abundant protein (.1) Potri.002G165000 [exp] 183 / 5e-60 AT2G46140 189 / 3e-62 Late embryogenesis abundant protein (.1) Potri.007G146300 [exp] 81 / 1e-18 AT2G44060 448 / 2e-159 Late embryogenesis abundant protein, group 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10001869 pacid=23181642 polypeptide=Lus10001869 locus=Lus10001869.g ID=Lus10001869.BGIv1.0 annot-version=v1.0 ATGGCGAATCTGTTTGACCAGGCGAAGAATTTGGTGGCCGAGACGGTTGGCAGGATACCTATCCCGGAAGCCACAGTTACAGACGTTGATCTCAGCGGTG TCCGACTCGACCACGTCGAATACGTTGCTAGGGTCTCTGTAGACAATCCTTACCCAGCTCCTATCCCCATCAGCGAGATCTCCTACAACCTCAAAAGCAA CGGCAGAGTGATAGCGCACGGGACGGTGCCAGACCCAGGGTCTCTGAAAGCCAACGGGAAGACGGATTTGAACGTGATAGTGAAAGTGCCGCACACCATA CTTGTTAGTTTGGTTGCTGACATAACAAAGGATTGGGACATCGACTATGAACTTGAGTTGGGGCTTGTTATTGATCTTCCAGTAGTGGGCACTTTCACCA TTCCTCTTTCCAGCAAGGGCGAGATCAAGCTTCCTACCCTCTCTGATGTCTTCTCTTTTGGAAAGAAAAAGGAGTAA
AA sequence Show only first row Show all	>Lus10001869 pacid=23181642 polypeptide=Lus10001869 locus=Lus10001869.g ID=Lus10001869.BGIv1.0 annot-version=v1.0 MANLFDQAKNLVAETVGRIPIPEATVTDVDLSGVRLDHVEYVARVSVDNPYPAPIPISEISYNLKSNGRVIAHGTVPDPGSLKANGKTDLNVIVKVPHTI LVSLVADITKDWDIDYELELGLVIDLPVVGTFTIPLSSKGEIKLPTLSDVFSFGKKKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	0	1
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	1.4	0.9727
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	3.7	0.9696
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	4.2	0.9587
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	4.2	0.9642
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	4.9	0.9623
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	5.0	0.9607
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	6.9	0.9449
AT4G30170			Peroxidase family protein (.1)		Lus10001442 [exp]	7.3	0.9527
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	7.5	0.9553
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	8.9	0.9547

Compare expression of checked genes

Lus10001869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.