Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01470 177 / 7e-54 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) AT2G46140 171 / 2e-51 Late embryogenesis abundant protein (.1) AT2G44060 83 / 3e-17 Late embryogenesis abundant protein, group 2 (.1.2) AT1G54330 50 / 1e-06 NAC ANAC020 NAC domain containing protein 20 (.1) AT3G17730 49 / 4e-06 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G15510 49 / 5e-06 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G61110 48 / 7e-06 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G65910 48 / 1e-05 NAC ANAC028 NAC domain containing protein 28 (.1) AT1G79580 47 / 1e-05 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT5G17260 47 / 2e-05 NAC ANAC086 NAC domain containing protein 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010140 [exp] 282 / 2e-94 AT1G01470 191 / 3e-63 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001869 [exp] 205 / 2e-64 AT1G01470 182 / 1e-59 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010139 [exp] 205 / 2e-64 AT1G01470 182 / 6e-60 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10036402 [exp] 196 / 3e-61 AT1G01470 167 / 4e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10007905 [exp] 193 / 2e-60 AT1G01470 170 / 2e-55 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10022017 [exp] 181 / 2e-53 ND / Lus10018837 [exp] 112 / 2e-27 ND / Lus10022018 [exp] 86 / 5e-20 AT1G69490 58 / 6e-11 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10008337 [exp] 84 / 3e-17 AT2G44060 465 / 2e-165 Late embryogenesis abundant protein, group 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090800 [exp] 206 / 4e-65 AT2G46140 206 / 5e-69 Late embryogenesis abundant protein (.1) Potri.002G165000 [exp] 180 / 6e-55 AT2G46140 189 / 3e-62 Late embryogenesis abundant protein (.1) Potri.007G146300 [exp] 82 / 4e-17 AT2G44060 448 / 2e-159 Late embryogenesis abundant protein, group 2 (.1.2) Potri.015G030200 [exp] 54 / 5e-08 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.006G028700 [exp] 52 / 3e-07 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.016G027900 [exp] 52 / 5e-07 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G129400 [exp] 51 / 8e-07 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1) Potri.012G038100 [exp] 50 / 1e-06 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.010G229700 [exp] 50 / 3e-06 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.010G166200 [exp] 49 / 4e-06 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein CL0159 [flax] [poplar] PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10001876 pacid=23181647 polypeptide=Lus10001876 locus=Lus10001876.g ID=Lus10001876.BGIv1.0 annot-version=v1.0 ATGTTGTCATCATCGTCGCGGTGGCTAATAGCGATGGACAGGGCCAAGAACTACATAACAGAGAAAGTGACCAACATGAAGAAACCTGAAGCTTCAGTCA CCGACGTAGACCTCAAGAGCCTCCACCGCAATCACATCGAGTACGTGTCAAAAGTCTCGATCGAGAACCCTTACCCTACTCCGATCCCGATCTGCGAGAT CACCAACGTGCTCAAGAGCGACAGCAGGATGATCGCGCACGGGACCATCCCCGACCCGGGATCGCTCAAGGCGGGAGGGAAGACCGATCTGGAGGTACCA GTGAAAGTACCACACATCATACTGGTGAGTCTAGTGAGGGACAAAGGTAGGGATTGGGACATTGACTATGAGTTGGAGTTGGGTCTTGTCATTGATATTC CAGTTGTTGGAAACTTCACCATTCCTTTGTCCAGCAGGGGTGAGGTCAAGCTCCATACTCTCTCTTATGTTTTTTCTTCTGGTGGTGGTTCTAACAACAA TAACAACAACAACTTTAATCCGACGGCGGAAGAACTCGTCAATTATTACCTCAAGGGTAAAGCTAAAGGGGAGCCTCTGCCTCCGAACCTGATTCGTGAG ATTGACCTCTACGGTGATAAAACTCCGTGGGAGATCTTTCCTGGCAATGACAGATTTTTCACTTTCACAAAACTTAAGAAGGCCAACGCGAAGAGAGTTT CCATGAATTTAGCTTGTGGGAAATGGAAATGGCATGGAAACAATAGAGGGATATTAGGGAAACAAACTCAAAGAAAAGAGTCGGACTACGTTTTGAGTGA GATCCTGAAGAAACCACAAAGGTCGGAGGATCGTGAGATTGAGGAGAGGAGTATGGTTACTGACCTAGGAGTTACTGCTACTTGTGGAGATACACCCTCA TCATCATTGGTAATTGTGGGAAGTAGCTCGGTTGAGGATTGTAACGATGTTCAGGATATTCACCATCATGTTGCTGCTGCCAGTGATGATATGTACGTGA CTGAGTTTTGCACAGATGCTTCTCAATGTTTAGTAGAAGAATTCACATCCTTTCCAGCAGTATCTACTCCTATGAAAGCTCATGATGTTCAAGGCTCTCG ATCAGCAGCTGAAACCCTTCAACAGGATATTGATCTTCTTTGGTTGCTCGCTGAAGCTATGGCTACGGACACGACTATTGATGAAGAAGACGACTCACAA GGAGCTGCTGGTACTTGTGGTCAATCAACAACATCGTTGCCGGCTTTAAAGCTTCAGTATCCACAATCATATAATTTTGGTGATTATCTTCGGCTCTCTT CCGTGATTACTGCGACTGTTTCTAGTCAGACCCCTCGCTATGTAATTTGA
AA sequence Show only first row Show all	>Lus10001876 pacid=23181647 polypeptide=Lus10001876 locus=Lus10001876.g ID=Lus10001876.BGIv1.0 annot-version=v1.0 MLSSSSRWLIAMDRAKNYITEKVTNMKKPEASVTDVDLKSLHRNHIEYVSKVSIENPYPTPIPICEITNVLKSDSRMIAHGTIPDPGSLKAGGKTDLEVP VKVPHIILVSLVRDKGRDWDIDYELELGLVIDIPVVGNFTIPLSSRGEVKLHTLSYVFSSGGGSNNNNNNNFNPTAEELVNYYLKGKAKGEPLPPNLIRE IDLYGDKTPWEIFPGNDRFFTFTKLKKANAKRVSMNLACGKWKWHGNNRGILGKQTQRKESDYVLSEILKKPQRSEDREIEERSMVTDLGVTATCGDTPS SSLVIVGSSSVEDCNDVQDIHHHVAAASDDMYVTEFCTDASQCLVEEFTSFPAVSTPMKAHDVQGSRSAAETLQQDIDLLWLLAEAMATDTTIDEEDDSQ GAAGTCGQSTTSLPALKLQYPQSYNFGDYLRLSSVITATVSSQTPRYVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001876 [exp]	0	1
AT1G56220			Dormancy/auxin associated fami...		Lus10020661 [exp]	2.8	0.9193
					Lus10027664 [exp]	5.1	0.8948
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	9.2	0.8338
					Lus10036703 [exp]	9.8	0.8711
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	11.9	0.8726
AT3G50940			P-loop containing nucleoside t...		Lus10015802 [exp]	14.3	0.8593
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	15.5	0.8667
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	17.9	0.8417
					Lus10017557 [exp]	18.8	0.8523
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	19.3	0.8345

Compare expression of checked genes

Lus10001876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.