Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61540 629 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010141 [exp] 846 / 0 AT3G61540 690 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G164700 [exp] 669 / 0 AT3G61540 666 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G090601 [exp] 402 / 4e-139 AT3G61540 353 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10001877 pacid=23181638 polypeptide=Lus10001877 locus=Lus10001877.g ID=Lus10001877.BGIv1.0 annot-version=v1.0 ATGGCTGTAAATAATCTCTCCTCACCCTTGCTTTCTCCGCCGGAGCATGTAGTTGGACCCTGGTATTCCGTTCCAGACCTCCGGCTTCGCGATCACCGAT TTTCCGTTCCCCTCAACTATTCCTCCGCTGATCGCAACGCTTCTCCGAAACTCACCCTCTTTGCTCGTGAAGTCGTTGGCGTTGGGAAAGAAGATCAACC AATGCCATATCTTCTGTACCTGCAAGGTGGTCCAGGTTTTGAGTGTCCACGTCCTTCTGAAGCTAGCGGATGGTTACAGAAAGCCTGTGAGGAATATCGC GTGAGAGGAACAGGCTTATCTACTGCTTTGACACCTTCATCTATGTCTCAACTTGGTTCTGCGGAGGAGGTTGCTGAATACGTGACAAACTTCCGAGCTG ATAACATAGTGAAAGATGCCGAGTTTATCCGGATTCGTCTTGTTCCTGATGCTGGACCCTGGGTAGTATTGGGTCAGAGCTACGGTGGATTTTGTGCAGT GACTTATTTGAGTTTTGCACCTCAAGGACTAAAGCAAGTGCTTCTAACTGGAGGGACACCTCCTTTAGGAGATCACTGCACTGCAGATGCTGTCTACAGA GTTTGCAGTGAACAAGTTATTCGCCAGAATGAGAAGTACTATGAGAGGTTCCCTCAGGACGTTGAGATTGTTCGTGAAGTTGTCGAGTATCTAGCTCATG CAGAAGGAGGCGGGGTGCCTCTTCCATCAGGAGGATTCTTAACGCCAAAAGGGTTACAAACTCTTGGTCTTTCTGGTCTGGGATCTAGTTCAGGTTTTGA ACGTTTGCATTATTTGTTTGAGAGGGCATGGGATCCTTTAATAGTTCAAGGATCACAGAAGCAAATCAGTGACTACTTCCTGAATGGCTTCGATAACTGG TTTGATTTTGGTACCAACCCGCTATATGCTCTCATGCAGGAATCTATATACTGCCAGGGTGCCGCATCACAGTGGTCTGCTCATAGAATAAGGGGTGAAG ATGGTGGAAAATTTGATGCAATCAAAGCCATTGAAGAGGGCCGTCCTATATTTTTCACAGGGGAGATGGTGTTTCCATGGATGTTTGATGAAGTGTTCTC TCTAAAGAAATACAAAGAGGTGGCTCAGTTATTGGCTGAGAAGAATGATTGGCCTGCTTTGTACGACACGGATGTGCTTAGCCGCAATAAGGTGCCTGTT GCCGCAGCTGTCTATTACGACGACATGTACGTGAATTTCAAGGTGGCGAAAGAGACAGCATCTAAGATTGCAGATATAAGGGTATGGATAACGAATGAGT ACATGCATTCGGGTCTCAGAGATGGAGGAGGGCAGGTACTGGATCAGTTACTGGGCATGTTGAACGGCAAGAAGCCTTTGTTCTAA
AA sequence Show only first row Show all	>Lus10001877 pacid=23181638 polypeptide=Lus10001877 locus=Lus10001877.g ID=Lus10001877.BGIv1.0 annot-version=v1.0 MAVNNLSSPLLSPPEHVVGPWYSVPDLRLRDHRFSVPLNYSSADRNASPKLTLFAREVVGVGKEDQPMPYLLYLQGGPGFECPRPSEASGWLQKACEEYR VRGTGLSTALTPSSMSQLGSAEEVAEYVTNFRADNIVKDAEFIRIRLVPDAGPWVVLGQSYGGFCAVTYLSFAPQGLKQVLLTGGTPPLGDHCTADAVYR VCSEQVIRQNEKYYERFPQDVEIVREVVEYLAHAEGGGVPLPSGGFLTPKGLQTLGLSGLGSSSGFERLHYLFERAWDPLIVQGSQKQISDYFLNGFDNW FDFGTNPLYALMQESIYCQGAASQWSAHRIRGEDGGKFDAIKAIEEGRPIFFTGEMVFPWMFDEVFSLKKYKEVAQLLAEKNDWPALYDTDVLSRNKVPV AAAVYYDDMYVNFKVAKETASKIADIRVWITNEYMHSGLRDGGGQVLDQLLGMLNGKKPLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61540			alpha/beta-Hydrolases superfam...		Lus10001877 [exp]	0	1
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10042727 [exp]	6.0	0.9155
AT5G49710			unknown protein		Lus10015965 [exp]	9.6	0.9288
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	10.4	0.9217
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	11.6	0.9210
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	12.1	0.9260
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	14.0	0.9212
AT2G32210			unknown protein		Lus10003815 [exp]	19.1	0.9161
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	20.0	0.9163
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10026879 [exp]	22.8	0.9047
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	22.8	0.9156

Compare expression of checked genes

Lus10001877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.