Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46110 228 / 6e-75 PANB1, KPHMT1 ketopantoate hydroxymethyltransferase 1 (.1) AT3G61530 224 / 1e-73 PANB2 Phosphoenolpyruvate carboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010142 [exp] 287 / 5e-98 AT3G61530 581 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090500 [exp] 236 / 6e-78 AT2G46110 579 / 0.0 ketopantoate hydroxymethyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF02548 [flax] [poplar] Pantoate_transf Ketopantoate hydroxymethyltransferase
Representative CDS sequence Show only first row Show all	>Lus10001878 pacid=23181636 polypeptide=Lus10001878 locus=Lus10001878.g ID=Lus10001878.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTCACCAAACTCTCCCGAACCTCCACCGCCGCAGTCAAATCCAGCCACCTCCTCTCCAATCTCCGTTGGTTTAGCAACGTCCCCGAAAACA CCGTCTACGGTGGGCCACAGCACCAAAACCCTAACCAGAGAGTCACCTTAACACATTTGCGGCAAAAGCACAAGAAAGGAGAACCAATCACCGTTGTCAC CGCTTATGACTATCCTGCTGCAGTCCACGTCGATGCCGCCGGAATCGACGTCTGCTTGGTCGGTGACTCTGCCGCCATGGTCGTCCACGGCCACGATACC ACTCTCCCAATCTCCCTTGAGGAAATGCTCGTTCACTGCCGCGCCGTCGCCCGCGGAGCCAAGCGCCCTCTCCTCGTCGGAGACTTGCCCTTCGGAACCT ACGAATCCAGCGACACTCAGGAACTCTGGAATTTCACGAGCGAGCTGGGATTGCTATCATGGAATACACTGTTCGATGGACATCAAATAAAATATTACGT ACAAATATAA
AA sequence Show only first row Show all	>Lus10001878 pacid=23181636 polypeptide=Lus10001878 locus=Lus10001878.g ID=Lus10001878.BGIv1.0 annot-version=v1.0 MAFLTKLSRTSTAAVKSSHLLSNLRWFSNVPENTVYGGPQHQNPNQRVTLTHLRQKHKKGEPITVVTAYDYPAAVHVDAAGIDVCLVGDSAAMVVHGHDT TLPISLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSDTQELWNFTSELGLLSWNTLFDGHQIKYYVQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46110		PANB1, KPHMT1	ketopantoate hydroxymethyltran...		Lus10001878 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10016344 [exp]	86.8	0.6961
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	109.5	0.6715
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10041717 [exp]	143.2	0.6900
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	155.1	0.6677
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10026007 [exp]	206.8	0.6507

Compare expression of checked genes

Lus10001878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.