Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27430 376 / 1e-127 ARM repeat superfamily protein (.1) AT2G25130 144 / 4e-38 ARM repeat superfamily protein (.1) AT4G31890 144 / 6e-38 ARM repeat superfamily protein (.1.2) AT1G67530 84 / 6e-17 ARM repeat superfamily protein (.1.2) AT2G23140 74 / 9e-14 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G24330 73 / 1e-13 ARM repeat superfamily protein (.1) AT1G27910 65 / 6e-11 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G71020 63 / 2e-10 ARM repeat superfamily protein (.1.2) AT1G23030 62 / 5e-10 PUB11 ARM repeat superfamily protein (.1) AT3G46510 59 / 5e-09 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013918 [exp] 483 / 2e-171 AT2G27430 337 / 4e-114 ARM repeat superfamily protein (.1) Lus10041017 [exp] 158 / 7e-43 AT4G31890 621 / 0.0 ARM repeat superfamily protein (.1.2) Lus10013459 [exp] 152 / 1e-39 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10037005 [exp] 69 / 3e-12 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10015801 [exp] 67 / 2e-11 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10019308 [exp] 66 / 5e-11 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 65 / 6e-11 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10006427 [exp] 64 / 1e-10 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10034113 [exp] 62 / 7e-10 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055500 [exp] 427 / 2e-147 AT2G27430 478 / 1e-167 ARM repeat superfamily protein (.1) Potri.011G065300 [exp] 422 / 1e-145 AT2G27430 449 / 2e-156 ARM repeat superfamily protein (.1) Potri.006G263100 [exp] 154 / 2e-41 AT4G31890 545 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 75 / 4e-14 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G058000 [exp] 75 / 5e-14 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 73 / 1e-13 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 73 / 1e-13 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.008G177100 [exp] 67 / 1e-11 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 61 / 1e-09 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 59 / 4e-09 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10001881 pacid=23179020 polypeptide=Lus10001881 locus=Lus10001881.g ID=Lus10001881.BGIv1.0 annot-version=v1.0 ATGTCCAACCCACCTTCTTCTTCCTCCTCCTCTGCCTACACCTGCTCATCACTCCCCTACACCAAGCTCCAGTTCTTCGCCCGAATCCGCCGCTTCCTCC GATCCAAAGCGGGGAAGCCGAAACCCATTGCAGCAATACCTAGTACAAACACGGAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAATGCTTCAGAAATTTT GAAAACAGAGTCGCCGGAAACAGAGGATGACTCGCCAGCGGCGGCGGAGGGGTTGCGGAGATCGGTGAAGAAGCTTCATTTCGGGAAGAGCTGGGAAGAG AAGGAATCGGCGGCTGTTGATATTGCTAGGTTCGCTAAGGAGGATGTGAAGACGAGGAAATTGATCGCCGAGCTTGGTGTTATTCCGGTGTTGGTTGACA TGGTTGGTTCTGAAGTTGATTCCCGCCGGTGTGCCGCCGTCACGGCGTTGACCGAGCTAGCCGACGGAACTTACACGAACAAGGCTCTAATTCTAGAAGC AGGAATCCTTTCAAAAACCCCCAAAGAACAATCCACCGTGGGCAAATTCTCAGAGCTATTCCTGTCACTGTCCACGCTGGCAAACACCCAGTTCCACCTC TCCCCATCCGAGGTCATCCCCTTCCTAGTCAGCACTCTCGAATCCGCCACCACTTCCACATCAGCCAAACAATCATGCCTGTCTGCATTATACAACCTCT CGTCCGCTTTGGAAAATGCAGTCGTTTTAGCTTCAGGTGGCGTTGTGCAGACCCTTCTCAACTTGGTCTCCCGAAAGGACCTAGCGGAGAAGGCGTTGGC TGTTTTGGGGAACTTGGTGGTGACGGCAAACGGGAAAAGGGCGATGGAGGATGATGACGACAGCTCATCGTCCGCCGTTCCAGGGGCGTTGATCGAGGCG CTGACATGGCAAGACAAGCCGAGGTGTCAGGAGCTGTCCGCGTACATGTTGATGATCCTGGCCTATCAGAGCTCGGCCCAGAGGGAGAAGATGGCCCAGT GCGGGATTGTGGCCGTGTTATTGGAAGTAGGGCTTTTGGGAAGCCCGTTGGCGCAAAAGCGGGCCTTGAAGCTTCTCCAGTGGTTTAGAGACGAGAGGGA GACAAAGATGGGCCGGCCCCACTCCGGGCCGCAAACAGGTAGGCTCGGGATTGGGTCGCCGATCAACCCGAGGGAGGCCCACGAAGGGAGGAGGATGATT AAGGATTTGGTTAGGCAGAGTTTGAATAAGAATTTGGAGGTGATTACTAGGAGAGCTTCTGCTAGCAGTAGTGATTGTGGTGGTGGAGGTATCAAAGTGA AGAGTTTGGTTGTTAGTACGAGTTCCAAGAGTTTGCCGTACTAG
AA sequence Show only first row Show all	>Lus10001881 pacid=23179020 polypeptide=Lus10001881 locus=Lus10001881.g ID=Lus10001881.BGIv1.0 annot-version=v1.0 MSNPPSSSSSSAYTCSSLPYTKLQFFARIRRFLRSKAGKPKPIAAIPSTNTECSSSSSSSSNASEILKTESPETEDDSPAAAEGLRRSVKKLHFGKSWEE KESAAVDIARFAKEDVKTRKLIAELGVIPVLVDMVGSEVDSRRCAAVTALTELADGTYTNKALILEAGILSKTPKEQSTVGKFSELFLSLSTLANTQFHL SPSEVIPFLVSTLESATTSTSAKQSCLSALYNLSSALENAVVLASGGVVQTLLNLVSRKDLAEKALAVLGNLVVTANGKRAMEDDDDSSSSAVPGALIEA LTWQDKPRCQELSAYMLMILAYQSSAQREKMAQCGIVAVLLEVGLLGSPLAQKRALKLLQWFRDERETKMGRPHSGPQTGRLGIGSPINPREAHEGRRMI KDLVRQSLNKNLEVITRRASASSSDCGGGGIKVKSLVVSTSSKSLPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27430			ARM repeat superfamily protein...		Lus10001881 [exp]	0	1
AT1G71740			unknown protein		Lus10029742 [exp]	4.9	0.9239
AT5G45030			Trypsin family protein (.1.2)		Lus10031205 [exp]	5.8	0.8853
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	7.1	0.9242
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	8.8	0.9130
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	9.0	0.8783
AT2G24370			Protein kinase protein with ad...		Lus10040573 [exp]	17.7	0.9081
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	19.4	0.9059
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019020 [exp]	19.6	0.8661
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	20.8	0.9083
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	23.8	0.9014

Compare expression of checked genes

Lus10001881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.