Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25710 122 / 1e-32 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT1G68810 121 / 3e-32 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 107 / 8e-28 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G40200 103 / 4e-26 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41130 99 / 2e-24 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 56 / 8e-09 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00870 48 / 3e-06 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 44 / 6e-05 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09820 41 / 0.0008 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013917 [exp] 414 / 2e-147 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038306 [exp] 158 / 3e-47 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10035056 [exp] 117 / 2e-30 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 114 / 2e-29 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028978 [exp] 107 / 6e-28 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 105 / 7e-27 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 103 / 7e-26 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 102 / 7e-26 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 102 / 7e-26 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065500 [exp] 222 / 1e-72 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G055700 [exp] 222 / 3e-72 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 172 / 8e-53 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 169 / 3e-51 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G037100 [exp] 115 / 4e-31 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 115 / 9e-31 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 115 / 4e-30 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 112 / 1e-29 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 112 / 5e-29 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 100 / 3e-25 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001885 pacid=23179024 polypeptide=Lus10001885 locus=Lus10001885.g ID=Lus10001885.BGIv1.0 annot-version=v1.0 ATGTTTGCTGACGACGAGTACTTCTACAACTCTTATAACCCCCGGAACTCTTCACCATTTGGTTACTCCGGGAAATTCGCGGACCTTGATCATCATCTCC CGCCGTTGCCGGAAGCTTTCGATGAATTTTATTCTCGAGGTGGGTCGTCGTCGTCGTCGGCTTCACAGGCTTTGGTGTTGGACAACGAGAAAGGCGAGCT AGTAAAAGCGCCGGCGACGAGGGTCGCCGCCGGGAAGAAGGAGGTTTCGGAGGCGAAAGCTCTGGCAGCTTTGAAGAGTCACAGTGAAGCTGAGAGGAGG AGAAGGGAGAGGATCAATGCCCATCTCGCCACTCTGCGTGGACTCGTCCCCGGTACTGAAAAGATGGACAAAGCCACACTGCTTGCAGAAGTGATAAGCC AAGTGAAAATGCTGAAACAGAATGCCATGGAATCCAGCAAGGGTCACCTCATTCCAATGGACAACGACGAAGTCAAAGTCGTAGTCGAGCCATCACTAAA CCATGGGAGTACTACTCTCTCTTTCAGGGCATCTTTATGCTGCGAATACCGGCCTGAGCTCATGTCCGAGATACGACAAGCCATCGAATCCCTTCAGTTG AAGCTGCTGGATGCTGAGATGTCGACTCTAGGAAGCTGGGTGAAGAACGTGTTCATCCTCACCAAATGCGGAGGAATCGAAGATAATGCCGAGGCACAAA GCGGACTAGCAAGCTGCATTCACGAGGCATTGAGTTCTGTAGTGGAGAAAGGCTATGCCTCTGCAGAGTATTCGACAAGAAAACGATTCTCAACAAGAAG AGACGGGTGA
AA sequence Show only first row Show all	>Lus10001885 pacid=23179024 polypeptide=Lus10001885 locus=Lus10001885.g ID=Lus10001885.BGIv1.0 annot-version=v1.0 MFADDEYFYNSYNPRNSSPFGYSGKFADLDHHLPPLPEAFDEFYSRGGSSSSSASQALVLDNEKGELVKAPATRVAAGKKEVSEAKALAALKSHSEAERR RRERINAHLATLRGLVPGTEKMDKATLLAEVISQVKMLKQNAMESSKGHLIPMDNDEVKVVVEPSLNHGSTTLSFRASLCCEYRPELMSEIRQAIESLQL KLLDAEMSTLGSWVKNVFILTKCGGIEDNAEAQSGLASCIHEALSSVVEKGYASAEYSTRKRFSTRRDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	1.7	0.8996
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	8.8	0.9119
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10032246 [exp]	9.4	0.8825
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	11.7	0.9033
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10031609 [exp]	15.5	0.8780
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	16.2	0.8995
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	16.3	0.8969
AT1G70410		ATBCA4	beta carbonic anhydrase 4 (.1....		Lus10030614 [exp]	18.4	0.8897
AT1G24130			Transducin/WD40 repeat-like su...		Lus10029206 [exp]	18.8	0.8892
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005774 [exp]	18.9	0.8652

Compare expression of checked genes

Lus10001885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.