Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25650 161 / 3e-45 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 68 / 2e-12 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT2G24820 56 / 2e-08 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025412 [exp] 261 / 4e-83 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025414 [exp] 256 / 3e-81 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10001887 [exp] 218 / 2e-68 AT4G25650 275 / 4e-88 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013915 [exp] 229 / 5e-64 AT4G25650 619 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013916 [exp] 207 / 1e-63 AT4G25650 274 / 1e-86 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 191 / 2e-56 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025415 [exp] 187 / 7e-55 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 179 / 1e-51 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015287 [exp] 178 / 2e-51 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005700 [exp] 235 / 2e-73 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 222 / 3e-68 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005900 [exp] 175 / 2e-50 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 164 / 1e-46 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 162 / 1e-45 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 160 / 8e-45 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 69 / 6e-13 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.006G267300 [exp] 61 / 3e-10 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.009G004100 [exp] 57 / 6e-09 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.018G015700 [exp] 55 / 4e-08 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001886 pacid=23179008 polypeptide=Lus10001886 locus=Lus10001886.g ID=Lus10001886.BGIv1.0 annot-version=v1.0 ATGGAAGGTGTTCGACGATATGTGTCCTCACCGTTTGGCTCCGTTATCGGAAGGAAGGATCGATCAGTCCGGGAGGCTGCAGTGTGTTTCATGGTTGGTG ATCCAACCATACTGCACCATGACATCGTCTGGTTTTGGCCAAACTCCGAGCCTCACTACAAAGACATCTTCCAAACCAAAAAGCCACCATTCATTCCCGA GTTGGATGATCCATCATTCACTACTATAACCGGAAGCCGCGATCTTCCTTATCAGTATGAAGTGCTGCTGGAGAACCTTATGGATCATGCGCATCTTCCC TATGCACATTCCGGAATGATAGAAACGCAGTCACTAGAAGTAAAGCGTGATAAAAAAGGGGGGAGACCGCTCGATTTTAATGTGAGGAAACTCGACGTGG AAGGGTTTGATGCAAAGCTCGATTTCGGCCACAGTAAATTCCATGCACCTTGCATCTTTTCCATGCATGTTGAAGTGCATCCTCCTACCAATAAGCCATC GAGGCCAGCAGTGATTTTCATTTGCATTCCGCACACGTCGTGTTTCGTGCCAACTAAATCGCACGCTTTGGTGGTCGGTTTACGGAGATGGCTCAACAAA TATGCTGGTGGTGAAGTTGACTGGAGAGGCAAGTATATTGTTGATCTTCCTCCAACTTCCCCCAAGGAACAACTTATGGATAGGTGCTGGACTCATGTAG TGAACTGTAGTAGTAGCAGTGGAGCATATAAAAGTCTGAATGCTCTCGAGACGATCCTCCAAGTGGCTGCGGTTGGATTAATCGGGATCGTTGTTGCAAC CAAGCAAGGTACATTGTCAACAGAAGCAAGAACCGGACTAGGAATATTGGCCACTGTGTGTTTTGCGGCTTCGAGATGGTTGGCTTATTTCGTCTTTAAC AACTTCCGTTACCACGGCTACGATCATGTCGTGCCTAAAAAAATTATGTTTTCTTCGTTCGGATATGGCGATTAG
AA sequence Show only first row Show all	>Lus10001886 pacid=23179008 polypeptide=Lus10001886 locus=Lus10001886.g ID=Lus10001886.BGIv1.0 annot-version=v1.0 MEGVRRYVSSPFGSVIGRKDRSVREAAVCFMVGDPTILHHDIVWFWPNSEPHYKDIFQTKKPPFIPELDDPSFTTITGSRDLPYQYEVLLENLMDHAHLP YAHSGMIETQSLEVKRDKKGGRPLDFNVRKLDVEGFDAKLDFGHSKFHAPCIFSMHVEVHPPTNKPSRPAVIFICIPHTSCFVPTKSHALVVGLRRWLNK YAGGEVDWRGKYIVDLPPTSPKEQLMDRCWTHVVNCSSSSGAYKSLNALETILQVAAVGLIGIVVATKQGTLSTEARTGLGILATVCFAASRWLAYFVFN NFRYHGYDHVVPKKIMFSSFGYGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	0	1
					Lus10041320 [exp]	1.7	0.9044
AT1G63820			CCT motif family protein (.1)		Lus10024655 [exp]	2.0	0.8174
AT1G63060			unknown protein		Lus10001796 [exp]	2.8	0.8832
AT1G63060			unknown protein		Lus10002567 [exp]	3.5	0.8832
AT3G22060			Receptor-like protein kinase-r...		Lus10022286 [exp]	5.5	0.8044
					Lus10030519 [exp]	6.0	0.7821
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	8.4	0.7941
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	8.5	0.7664
AT4G29035			Plant self-incompatibility pro...		Lus10019767 [exp]	8.9	0.7735
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10026678 [exp]	9.2	0.7251

Compare expression of checked genes

Lus10001886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.