Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25650 239 / 3e-74 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 106 / 3e-25 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT2G24820 66 / 1e-11 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT1G44446 44 / 0.0001 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013916 [exp] 475 / 6e-168 AT4G25650 274 / 1e-86 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10013915 [exp] 451 / 2e-157 AT4G25650 619 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 281 / 1e-90 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 276 / 1e-88 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025415 [exp] 275 / 2e-88 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025414 [exp] 266 / 2e-84 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015287 [exp] 258 / 1e-81 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 256 / 5e-81 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 223 / 6e-68 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005900 [exp] 262 / 3e-83 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 250 / 9e-79 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 243 / 8e-76 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 239 / 1e-74 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 228 / 2e-70 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 226 / 2e-69 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 98 / 3e-22 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 90 / 1e-19 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.006G267300 [exp] 68 / 3e-12 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.018G015700 [exp] 64 / 4e-11 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10001887 pacid=23179019 polypeptide=Lus10001887 locus=Lus10001887.g ID=Lus10001887.BGIv1.0 annot-version=v1.0 ATGCCGGTGAGTGACCTGGACAAGAGGGTCCCGCACGGGAAGAAAGTGTTGGGGATGGATGTGGTGGTGTGGTGGGACCGGAGCGAGAATGCATGGAAGG TGTTCGACGATATGCGTCCCCACCGTTTGGCTCCGTTATCGGAAGGAAGGATTGATCAGTGGGGGAGGCTGCAGTGTGTTTATCACGGTTGGTGCTTTGA CGGCTCCGGCAGCTGCCAGCTCATCCCTCAATCGCCTGCCGATGGCCCTCCTCGTGACAAAGAAGGTGGGAAACCACTTGATTTCACTGTGAAGAAACTG GACATAGACGGGTTCGATGCAGAGCTCGATTTCGGCCACAGTAAATTCGCTCCACCCTGCGTCTTTTCCATCCATGCTGAACTACCTTCTGCTATCAATA AGCCATCGAGGACAGCAGCGGTTTTCATTTGTGTTCCAGTTACTCCAGGGAACAGCAGACTAATCTGGTCTTTTCTGAGGAACTTTAGTATTTGGGTTGG TAAAGTTGTTCCTAGATGGATGAATCATATGGTTACGAACCTGCTTCTCGATTCGGATTTATATCTCCTTCATGCAGAGGAGCGTAAGATTATGGATATT GGCCCGGAGAATTGGCACAAGTCGTGCTTCGTGCCAACTAAATCAGACGCTTTAGTGGTCGGTTTTCGAAGATGGCTCAACAAATACGCCGGTGGTGAAG TCGACTGGAGAGGCAAGTATAGTGCTGGCGATCTTCCTCCGGCCGCCCCAAAAGAACAACTTATGGATAGCAGTTGCAGTAGAGCATATAAGTGTCTCAA CGCTCTCGAGACTGTTCTCCATGTAGCTGCTGTCGGATTACTTGGGATGGTGGTTGCGACCAAGCAGGGTACATTGTCAACAGGAGCAAGAACCGGACTG GGAATATTGGCAACTGTTTCTTTTGCGGTTTCGAGATGGTTGGCCTTTTTCGTCTACAACAACTTCCGTTACCATGGCTATGACCACGGCCTTCCTGAAA AAGTCTTGTTATTTGTTCGAATATGGAAATTAGGGCTTTCTTTTTAG
AA sequence Show only first row Show all	>Lus10001887 pacid=23179019 polypeptide=Lus10001887 locus=Lus10001887.g ID=Lus10001887.BGIv1.0 annot-version=v1.0 MPVSDLDKRVPHGKKVLGMDVVVWWDRSENAWKVFDDMRPHRLAPLSEGRIDQWGRLQCVYHGWCFDGSGSCQLIPQSPADGPPRDKEGGKPLDFTVKKL DIDGFDAELDFGHSKFAPPCVFSIHAELPSAINKPSRTAAVFICVPVTPGNSRLIWSFLRNFSIWVGKVVPRWMNHMVTNLLLDSDLYLLHAEERKIMDI GPENWHKSCFVPTKSDALVVGFRRWLNKYAGGEVDWRGKYSAGDLPPAAPKEQLMDSSCSRAYKCLNALETVLHVAAVGLLGMVVATKQGTLSTGARTGL GILATVSFAVSRWLAFFVYNNFRYHGYDHGLPEKVLLFVRIWKLGLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001887 [exp]	0	1
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10026956 [exp]	3.9	0.8896
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	7.1	0.8950
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10008894 [exp]	8.2	0.9094
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	9.2	0.8914
AT3G57030			Calcium-dependent phosphotries...		Lus10034411 [exp]	17.3	0.8930
					Lus10034388 [exp]	23.5	0.8860
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10038486 [exp]	26.3	0.8810
					Lus10040221 [exp]	28.1	0.8810
AT4G19390			Uncharacterised protein family...		Lus10018793 [exp]	29.0	0.8224
					Lus10011061 [exp]	29.8	0.8810

Compare expression of checked genes

Lus10001887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.