Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18593 148 / 8e-47 dual specificity protein phosphatase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013914 [exp] 285 / 1e-100 AT4G18593 148 / 1e-46 dual specificity protein phosphatase-related (.1) Lus10013913 [exp] 222 / 5e-76 AT4G18593 169 / 6e-55 dual specificity protein phosphatase-related (.1) Lus10022402 [exp] 125 / 2e-35 AT4G18593 147 / 2e-43 dual specificity protein phosphatase-related (.1) Lus10018112 [exp] 125 / 2e-35 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Lus10001890 [exp] 56 / 3e-11 ND 62 / 6e-14
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G056600 [exp] 162 / 2e-52 AT4G18593 172 / 2e-56 dual specificity protein phosphatase-related (.1) Potri.006G040300 [exp] 122 / 2e-34 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 122 / 3e-34 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001888 pacid=23179015 polypeptide=Lus10001888 locus=Lus10001888.g ID=Lus10001888.BGIv1.0 annot-version=v1.0 ATGGCGATCGAGAACTTGAACTCGGCAGCTGGGACAGAAGAAACTTCGCCTGCAGGCAATGAATGTACTGCACTCCAGACATTCGGACTCGTCTACCGGT GCAAAAAGTGTCGAAAAATCATTGCATATGATGACAACATAGTCACTCACGAGCGCGGTAAGGGCCCAGAGTCGTTCAAATGGAAGAAGAGAAGACATGA TCCTGTAGGAACTGCTCCAGCCGAGTGCTCCTCCATCTTTGTTGAGCCCATGGAGTGGATGCAAACAGGTAAAGGCTATGTGGGGAATAAGCTTCAGTGC GTCGGGTGCAACACGAGGTTGGGTTCGTTCAACTGGGCCGGAATGCAGTGCAACTGCGGTGCTTGGGTTAACCCTGCATTTCAACTTCACAAGAACAGAT TGGACGAATGTCCCTTATGA
AA sequence Show only first row Show all	>Lus10001888 pacid=23179015 polypeptide=Lus10001888 locus=Lus10001888.g ID=Lus10001888.BGIv1.0 annot-version=v1.0 MAIENLNSAAGTEETSPAGNECTALQTFGLVYRCKKCRKIIAYDDNIVTHERGKGPESFKWKKRRHDPVGTAPAECSSIFVEPMEWMQTGKGYVGNKLQC VGCNTRLGSFNWAGMQCNCGAWVNPAFQLHKNRLDECPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18593			dual specificity protein phosp...		Lus10001888 [exp]	0	1
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	12.1	0.7791
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	15.7	0.7857
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024250 [exp]	16.4	0.7748
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005638 [exp]	16.6	0.6730
AT5G50090			unknown protein		Lus10042139 [exp]	17.9	0.7156
					Lus10010925 [exp]	20.5	0.7303
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016665 [exp]	25.1	0.7498
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	27.8	0.7664
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	32.0	0.7312
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10041097 [exp]	37.2	0.7477

Compare expression of checked genes

Lus10001888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.