Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46230 89 / 1e-23 Protein of unknown function, DUF538 (.1) AT1G56580 81 / 5e-20 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT4G24130 79 / 3e-19 Protein of unknown function, DUF538 (.1) AT1G09310 77 / 1e-18 Protein of unknown function, DUF538 (.1) AT1G30020 70 / 5e-16 Protein of unknown function, DUF538 (.1) AT5G49600 65 / 6e-14 Protein of unknown function, DUF538 (.1) AT3G07470 44 / 6e-06 Protein of unknown function, DUF538 (.1) AT5G19860 41 / 5e-05 Protein of unknown function, DUF538 (.1) AT5G16380 38 / 0.0008 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013912 [exp] 210 / 4e-71 AT5G46230 123 / 5e-37 Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 149 / 4e-47 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 131 / 3e-40 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10033613 [exp] 91 / 4e-25 AT1G56580 63 / 4e-14 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 85 / 2e-21 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 85 / 2e-21 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 83 / 8e-21 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10000616 [exp] 77 / 5e-19 AT5G46230 86 / 1e-22 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 78 / 1e-18 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G056700 [exp] 165 / 1e-53 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 154 / 4e-49 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 136 / 2e-42 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 87 / 2e-22 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 87 / 2e-22 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 86 / 3e-22 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 86 / 7e-22 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 82 / 1e-20 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 65 / 7e-14 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 40 / 0.0001 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10001891 pacid=23179018 polypeptide=Lus10001891 locus=Lus10001891.g ID=Lus10001891.BGIv1.0 annot-version=v1.0 ATGGCAGATCAGAAGAAAGGAGCAGTGGTGAACAACGGCCACGAAGAAGGGCTGAAAGCAGCAATGGGTTTACTACAAGAGTTCGAGCTCCCTCTCGGTC TCCTCCCGCTCGAGGAAGTGCTCGAGGTTGGTTTCGTTAAGGAGACGGGTTACGTGTGGATCCTGCAGAAGAAGAAAGTTGAACATGTGTTCAAGATGAT CAGCAAGACTGTGAGCTATGACAAGGAGATCACTGGGTTCATCAGCAAGAAGAACATCAAGAAGCTTAAAGGTGTCAAGGCTAAAGAGTTCATGCTATGG CCTCCTGTTGGTGAGATCATCGTTGGCGAAGCCTCCACTGGCAAGATCCACTTCAAGAGCCTTGCCGGGATTACTAAGGTGTTCCCGGTTGAGGCGTTTG CTGCTGGACAGTGA
AA sequence Show only first row Show all	>Lus10001891 pacid=23179018 polypeptide=Lus10001891 locus=Lus10001891.g ID=Lus10001891.BGIv1.0 annot-version=v1.0 MADQKKGAVVNNGHEEGLKAAMGLLQEFELPLGLLPLEEVLEVGFVKETGYVWILQKKKVEHVFKMISKTVSYDKEITGFISKKNIKKLKGVKAKEFMLW PPVGEIIVGEASTGKIHFKSLAGITKVFPVEAFAAGQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46230			Protein of unknown function, D...		Lus10001891 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	1.4	0.9307
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035901 [exp]	2.0	0.8630
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	3.7	0.8890
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	14.9	0.8503
AT3G05390			unknown protein		Lus10004494 [exp]	15.6	0.8644
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10001132 [exp]	16.4	0.8622
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006696 [exp]	16.5	0.8317
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	19.3	0.8398
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	23.5	0.8385
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10014779 [exp]	24.2	0.7711

Compare expression of checked genes

Lus10001891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.