Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06330 86 / 2e-21 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 85 / 4e-21 Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 80 / 4e-19 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 70 / 2e-15 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 70 / 2e-15 Heavy metal transport/detoxification superfamily protein (.1) AT4G10465 69 / 5e-15 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 70 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 65 / 1e-13 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) AT1G29100 62 / 8e-13 Heavy metal transport/detoxification superfamily protein (.1) AT4G35060 61 / 3e-12 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013911 [exp] 213 / 3e-71 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10010147 [exp] 87 / 1e-21 AT2G18196 165 / 5e-52 Heavy metal transport/detoxification superfamily protein (.1) Lus10020704 [exp] 82 / 6e-20 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10033250 [exp] 82 / 7e-20 AT2G18196 251 / 3e-86 Heavy metal transport/detoxification superfamily protein (.1) Lus10008284 [exp] 82 / 1e-19 AT2G18196 246 / 4e-84 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 73 / 1e-16 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 73 / 1e-16 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 73 / 2e-16 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 73 / 2e-16 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065600 [exp] 110 / 3e-31 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G056800 [exp] 99 / 6e-27 AT1G06330 147 / 4e-46 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 96 / 1e-25 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 91 / 1e-23 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 89 / 7e-23 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.001G452400 [exp] 84 / 1e-20 AT2G18196 256 / 3e-88 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G149500 [exp] 81 / 2e-19 AT2G18196 257 / 9e-89 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G079800 [exp] 77 / 3e-18 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1) Potri.007G087300 [exp] 76 / 9e-18 AT4G39700 215 / 9e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 70 / 1e-15 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10001892 pacid=23179007 polypeptide=Lus10001892 locus=Lus10001892.g ID=Lus10001892.BGIv1.0 annot-version=v1.0 ATGTGCTGCCACGGCTGCGAGCTGAAGATCAAGAAGGCGCTTCGAAGGCTAGACGGAGTTAACGAAATAGACATAGACATGTCAACGCAGAAGGTGACGG TGATGGGCTACGTTGACCAAGAAACCGTCCTCAAAGCCGTTAGGAAGACCGGGAGAAGAGCCGAGCTGTGGCCGTACGGTTACAACCCTTCAGAGTATAC GAGGTTCAACCAGCAGAACTACAATTACCTGCAGCAGCCGGCTTATCTCTTGCAAAACCAGCCGCCGCCGCAGCAGCCAGCGCCGTCAGCGCCACCTTAT GAGGATGTTGTAGATAATGATGATAATCAGTACCACGTCGTTGACTACGATCAACAAGGTCGTGTTGGGTATACGGCTTCTTATGATGATGAGGATAGCT ACTATAGGGATTATCAACGACGGCCGGTGCTGTACTCGTTCGCCGACCAGCAGCCGGCGGCAGCCATGTTTAGTGACGAGAATCCGCATGCTTGTTCCAT GATGTGA
AA sequence Show only first row Show all	>Lus10001892 pacid=23179007 polypeptide=Lus10001892 locus=Lus10001892.g ID=Lus10001892.BGIv1.0 annot-version=v1.0 MCCHGCELKIKKALRRLDGVNEIDIDMSTQKVTVMGYVDQETVLKAVRKTGRRAELWPYGYNPSEYTRFNQQNYNYLQQPAYLLQNQPPPQQPAPSAPPY EDVVDNDDNQYHVVDYDQQGRVGYTASYDDEDSYYRDYQRRPVLYSFADQQPAAAMFSDENPHACSMM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06330			Heavy metal transport/detoxifi...		Lus10001892 [exp]	0	1
AT1G20180			Protein of unknown function (D...		Lus10017348 [exp]	1.4	0.8445
AT1G47530			MATE efflux family protein (.1...		Lus10002366 [exp]	16.9	0.7562
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	28.5	0.7499
AT5G36930			Disease resistance protein (TI...		Lus10027920 [exp]	71.2	0.6679
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10011670 [exp]	99.0	0.6790
					Lus10010046 [exp]	109.4	0.6641
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015643 [exp]	117.2	0.6829
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10021803 [exp]	142.1	0.6895
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10004226 [exp]	146.7	0.6923

Compare expression of checked genes

Lus10001892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.