Plant FIBer expression Database

Lus10001893 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29120 551 / 0 Hydrolase-like protein family (.1.2.3.4.5)
AT4G25770 291 / 1e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
AT1G10040 270 / 2e-86 alpha/beta-Hydrolases superfamily protein (.1.2)
AT5G51180 262 / 5e-84 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013909
[exp]
745 / 0 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5)
Lus10032496
[exp]
263 / 4e-84 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10006982
[exp]
255 / 2e-80 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10001320
[exp]
250 / 3e-79 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10042993
[exp]
247 / 1e-77 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G065700
[exp]
588 / 0 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5)
Potri.018G096035
[exp]
273 / 3e-87 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.001G079400
[exp]
260 / 4e-83 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.003G151300
[exp]
253 / 2e-80 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.002G113000
[exp]
253 / 2e-79 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF05057 DUF676 Putative serine esterase (DUF676)
Representative CDS sequence
>Lus10001893 pacid=23179022 polypeptide=Lus10001893 locus=Lus10001893.g ID=Lus10001893.BGIv1.0 annot-version=v1.0
ATGGCCGCCCCTTTTGGTTGTGGCTACTATTCTCCTTCTCCTTCCTTCTCTCGTCACAATTCTTCCCGGAATGGCGGAGCAGCTTCTTCTTCTTCTTCGC
CTCTAGCTTCCTCCTCTTCTCCGTCGTCGTCTTCCTCCTCCTCGTCCTGTTCGTGCTCTTCCTCTCCCGGACTCAGCTTCTCCTCTTACGGTGTAAGTAG
TAATTGGAAATATCAAGGTTCTAGAGTCCATGCTATGGATATGGCCACTCAAGAAAATTATGATTCCTACAGTCTACTGACCAATGGAAAAAATGAGCCC
GATCATCTCCTTGTTCTTGTTCATGGCATCCTTGCCAGCCCTGGCGATTGGAATTACGTGCAAGCGGAGTTGAAAAAGCGCCTTGGGAAAAACTATCTGT
TATATGCAAGTTCATCAAACACTTACACCAAAACATTCGGTGGCATTGATGGGGCTGGAAAGAGACTAGCAGAGGAAGTCACGCAAGTTGTGAGCAAGAC
ACAGAGTTTGAAAAGGATATCCTTTTTAGCTCATTCTCTCGGTGGTTTGTTCGCAAGATACGCGATTTCAGTTCTATATTCAGAAAATGACGAGAATCCA
TTGAAACTTAACGATGATATTGAGACAGGCTCTTGGAGAAGTGGTGGTAGAATTGCTGGACTTGATCCTGTCAATTTTATCACGTTAGCAACTCCACATC
TTGGAGTCCGAGGTAGAAACCAGCTGCCACTTCTTCTGGGAATTCCCTTCTTAGAGAAGCTCGTTCCGCCAATTGCTCATATTTTCGTTGGCTACACTGG
TAAGCAATTGTTTCTCACCGATGGCCAACCGAACAAACCGCCTCTTCTTCTAAGAATGACATCAGATTGTGAAGAAGGAAAGTTTATATCTGCACTCGGG
TCATTCAAGTGTCGCACTGTATATGCAAACGTATCGTATGACCACATGGTCGGCTGGCGTACTTCCTCCATTAGAAGGGAGACAGAACTTGTGAACCCCC
CTCGGCGATCTTTGGACGGTTACAAACACGTGGTGGACGTCGAGTACTGCCCGCCAGTATCCACAGACAGCCCTCATTTCCCTCCTGAAGCAGCAAAGGC
CAAAGCTGCAGCTCAAAATGAACCGAGCACCAAAAACACAGTAGAGTACCATGGCATCATGGAAGAGGAAATGATACACGGTCTGCAGCGGCTGGGATGG
AAGAAGATCGACGTCAGCTTTCATTCCGCATTCTGGCCTTTCTTCGCCCACAACAACATACACGTGAAAAACGAATGGTTTCATAACGCTGGCGCGGGAG
TTATAGCTCATGTTGCGGATACCCTGAAGCAGCAAGAACCCTCCTCGTACTTAACTGCTAGCTTGTAG
AA sequence
>Lus10001893 pacid=23179022 polypeptide=Lus10001893 locus=Lus10001893.g ID=Lus10001893.BGIv1.0 annot-version=v1.0
MAAPFGCGYYSPSPSFSRHNSSRNGGAASSSSSPLASSSSPSSSSSSSSCSCSSSPGLSFSSYGVSSNWKYQGSRVHAMDMATQENYDSYSLLTNGKNEP
DHLLVLVHGILASPGDWNYVQAELKKRLGKNYLLYASSSNTYTKTFGGIDGAGKRLAEEVTQVVSKTQSLKRISFLAHSLGGLFARYAISVLYSENDENP
LKLNDDIETGSWRSGGRIAGLDPVNFITLATPHLGVRGRNQLPLLLGIPFLEKLVPPIAHIFVGYTGKQLFLTDGQPNKPPLLLRMTSDCEEGKFISALG
SFKCRTVYANVSYDHMVGWRTSSIRRETELVNPPRRSLDGYKHVVDVEYCPPVSTDSPHFPPEAAKAKAAAQNEPSTKNTVEYHGIMEEEMIHGLQRLGW
KKIDVSFHSAFWPFFAHNNIHVKNEWFHNAGAGVIAHVADTLKQQEPSSYLTASL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G29120 Hydrolase-like protein family ... Lus10001893
[exp]
0 1
AT3G54510 Early-responsive to dehydratio... Lus10043455
[exp]
3.9 0.8124
AT5G48500 unknown protein Lus10009584
[exp]
4.6 0.8299
AT5G60750 CAAX amino terminal protease f... Lus10028751
[exp]
6.9 0.7802
AT1G62300 WRKY ATWRKY6, WRKY6 WRKY family transcription fact... Lus10022959
[exp]
8.1 0.7411
AT2G36870 XTH32 xyloglucan endotransglucosylas... Lus10001396
[exp]
9.7 0.8158
AT4G12110 ATSMO1-1, SMO1-... sterol-4alpha-methyl oxidase 1... Lus10004321
[exp]
13.8 0.7964
AT1G32240 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like sup... Lus10035386
[exp]
15.3 0.7796
AT1G74150 Galactose oxidase/kelch repeat... Lus10031420
[exp]
20.3 0.7999
AT3G18200 nodulin MtN21 /EamA-like trans... Lus10021200
[exp]
22.8 0.7605
AT1G07220 Arabidopsis thaliana protein o... Lus10018239
[exp]
28.2 0.7927

Lus10001893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.