Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34150 261 / 3e-73 ATSCAR1, WAVE1, ATRANGAP2 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) AT1G29170 246 / 2e-67 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) AT4G18600 239 / 6e-64 SCARL, ATSCAR-LIKE, WAVE5 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, SCAR family protein (.1) AT2G38440 197 / 7e-51 ITB1, DIS3, SCAR2, WAVE4, ATSCAR2 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) AT5G01730 178 / 5e-45 ATSCAR4, WAVE3 SCAR family protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013904 [exp] 1891 / 0 AT2G34150 300 / 6e-87 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) Lus10029437 [exp] 196 / 3e-50 AT5G01730 410 / 6e-119 SCAR family protein 4 (.1) Lus10022757 [exp] 176 / 2e-44 AT2G38440 431 / 1e-127 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057100 [exp] 383 / 7e-114 AT1G29170 447 / 3e-139 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.011G066100 [exp] 377 / 6e-112 AT1G29170 485 / 7e-154 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.016G129000 [exp] 202 / 2e-52 AT2G38440 444 / 2e-130 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.006G105800 [exp] 201 / 3e-52 AT2G38440 427 / 2e-126 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001897 pacid=23179011 polypeptide=Lus10001897 locus=Lus10001897.g ID=Lus10001897.BGIv1.0 annot-version=v1.0 ATGCCGCTGGTTAGGTTTCAGGTCAGGAACCAGTACGCTTTGGGCCAGCCGGAGCTCTTCAAGGAGGCCAACATTGATGATCCCAAGGCCGTCCTCGACG GCGTTGCCGTCGCCGGCCTCGTCGGGATCTTGCGTCAATTAGGCGATCTCGCTGAATTTGCAGCAGAGGTGTTTCACGGATTGCAGGAGCAGCTAACGAC GACAGCTTCTCGGAGTCAGAAGTTGAAGCTTCGAGTGCAGAACATTGAAGCTGCGTTGCCTCCTATTGAGAAGGCTATATTGGCACAGAATAGCCACATC CATTTTGCTTACACCGCTGGTTCTGAATGGCATCCTCGACTGCGGAATGAGCAGAATCACTTCATCTACAATGACTTGCCCCGTTTCATTATGGATTCTT ATGAAGAATGTCGCGATCCGCCACGCTTTCATATACTTGACAAATTTGACACTGGTGGTCCAGGATCGTGTTTGAAGAGGTATTCAGATCCAACCTTCTT TCGAAGAGCGTCAGGTGGGTTCAAGGAACATCATGCTGAGAAAGTTCAAAGAGATAAGAAGGCTCGTAAAATCAAGAAAAAGAGATCACTTCAAAGGAAA GGTAGCTCACTGCAGAATGGGTCAATCTCAAGTCACAGCGAGAGATCCCAGTTTTTTCAGCCAACAGTTAATGGACGGAGTTCTTCTTCACATACGGCCT CTACTATCGACTTGCCATTGAAATCAGAGATTGGTGATCATTCAAATTCTATTGATTCAGGAAATGGGTCAAATCATATTGAATGTGTTTTCCGTCCTAG TTCTTCTGCACAACTCGAGGAACAGAAGTCTAATGGATTCTCTTCAAGGTCATTCCAGGGTGATGATTCCCGTGATTCGGGCTTTTCAGAGGAACAGTCC AGGGTTGTTGATGATACTTCTCTGCATTGTTCCTCACCAAACCAGATTCACGATAGGCCCCATGGTGTTACTTGGGATGAAAAGGAAGAACGCGAAGATC CTGGAGTTGCTGATGATAGTTTTCTGCATTGTTCCTCACCAAAGCAGATTCACCATAGGTCCCCTGGTGTTACTTGGGTTGGAAAGGAAGAACACAAAGA GCCTGGAGTTGCTGATGATAGTTTTCTGCATGGTTCCTCACCGGAGCTGATTCCCATTAGTTCCTCTTGTCGTACCTGTGAAGAAAAGGCAGAAGGTGCA CAGCCTGAAACTCATAAAGGTTCTCTACCTAGGTCCTCACTGGAGTGGCTCCCCCCTGGTTTCTCCTGTGTCTCTTGGGATGAAAAAGAAGAATTATCAG AGGCTGAAATCCAACACTATGATGGAGATGAAGCTCCAGATGTTTTGACTGTAGACTCTGTCTTAGATATGCGAGAATCAGGGACCAATACTGAAATTCA TCATCCAACAGACCTCAGATTTGAGGATGACAATGTTCGAGGGCCAAGTTTCACTGCCGTCACCCTGCTTGAAGATGTTGAAAGTGAAACTGACAATTTC ATGGACGCTCTAAATTCAATTGATACAGAATCTGAGAGCGAACTTGATTATCAGACGAAACATGAAGTGAAAGAAGTTGAATGTGCTAACAGGGATAATG AGGGCTTAGCAGTTACTTCAGGTCAGACAAACCAGGAAGTGAAACAAGTTGAATGTGCAATTGATGAACGGAGGACAGAAGATCAGCAGGACGAGGTCTC TGGAGCTACTTCAGGTCATCATCCACATCATGATAGCTACTCCCCGCCCGATTTTTCTTCAAATCATGGAATGGCTTCTGATGTACTCATCCCAGTTCCT TTGGTCAGTCCTGATGAGGAACAAACTCATTCTTCTGAATCATCATCTACTGCTTCCGGTTCTGAATCAGATATACTGGCTTCTACAACTGCGGATGCCC CTGGTGCCTCAAAAGTGGAATCTCCTGTTCTTAACCGGTCATCTGTGATTGTAGTTAACGGAGTAAAGGAACTTTTGGCGGGTGCAGTTCTAAAGGATTC CGGGAAGCCTCGACAATCTTCTGCCGCTGAGTTATCCCAAGTAGATGGACCATCTGTGGTTGTAGTTAAAGAAGTCGAGGAACCATTGGCTGGTATCGTC CTAACTGATCCCAGAAAGCCTCGAGAATCTTCTATCACTGAGTTCTCCCATTTGGAACCAATCAGGTTCTGGACTAATGGGGGCCTCTTAGGACTTCAGC CATCAAAGCCTCCCGATTTCAACGGGTCAAATCCTGGTAGTCAAAGTTCTGCAACAAATACATCTGAGGTGGTAAACACCCCAATACCGAGCAACAACAC TGACAGTTCTGAAAGACCTGCTGGTTCCAGAATTTCTGAATCGTGCCATGACGTTAATGTTGCCAAAGCTAAAGATGCAATCGATCCTAACTACAGGAGT AGATTCCATCCGTATGACAGAGGATTGAATGCCAATAGTCCAGTCGCTCCTGGAAATGGATTGCCACTTGGTTCATTCATCAAATTTACTACATCCGGAG GAGCCAGTCATGAAAGCGATGGATACCCATCTCAAAATATGTTTGGACTTGGGCAAAGATTACTTGCTAACGGCTTTGGCAGAAGGATATCACTTCTGCC CAGTAGTGAATCTGAGCTGACTAGTTCATTACCCCAACCTGCCGAGTCGGAGAAAAAAGGTAGGCAACCCTTGATTAAATTTCAACCGAGTCAACCAGAC GATCTCAACATACGGTTTGGACACAAGCCTTCAGATGCAGGCTACCTTACATCTTCACCACCAGTTGAGCACATGAAATTATCTTTCCAACCCACCTGCG GTTCCGAGGCTTCGAAACTGCAGCTGAAATTTCCTGACGGTGGCTGCTGCAACGAAAGTACTACGGATATGTTTCCATCGTTTCAGTTGGTTCCAGATGC TGCAACCCGACGAAATGATGCCATCTCCGACTCGGATGATGACACATTCTGCAGATCATCTCCTTACTTGTCAGATGATTGTCTTAGCCATCACTCCGAC ACGGGTTCTGATCAGTGGGAAGCTGGTCAGTCCCCTGAAAGCGTCCATAACAGTGACCAGGATGTTTTATGTGCATTCGAATCCGTTCCAGCTCCCTTGA AGCTTGGTGACATGGAAACCAATGGCCTTTCTACAAGTCCTGCAGACGAAACTGAACTCGATCTTCCTAGTTTCGACTCTGTCAAGCTGCCGTTTGAGCA AGTAAGACAAAAAGAAGACCGGTTATCAAGTCCCTTGCCTCCACCTCTCCCCCCAGCACAATGGCGCCTATCGAAAGAATCAAAACCGGCATCTGATACA ATAGTAAGCAAACCACAAGCGATACCTGATGCTCCCCAGATCGCATTCGTTCCAAAACTTGTTGCAACTCCTACAACTCAGCAACCTAAACCAGCTCCAG CCACTGACCAACAGGCTCATCCGGTCATCGTTCCATTCACCCCGAACAGAAAGGATGAACCGAAGTTGAACTGGTTGAAAGATGATAATCCACTCACAAA TGGGAAGGTGATGCACGAACAAGAAGATTTCTTGCAGCAAATTAGATCAAAGTCATTTTCCCTGAGACCCACTGCACCAGTAAAGACAGCGGTGGCCGGT GCAACTGCAATCGACACAGTGACCGAAATCCTGAAGAAGGCCAGTGCAATTCACCAGGTAGTTGCGAGCGACGTTGATGACGACGATGCATGGAGCGACC CGTGA
AA sequence Show only first row Show all	>Lus10001897 pacid=23179011 polypeptide=Lus10001897 locus=Lus10001897.g ID=Lus10001897.BGIv1.0 annot-version=v1.0 MPLVRFQVRNQYALGQPELFKEANIDDPKAVLDGVAVAGLVGILRQLGDLAEFAAEVFHGLQEQLTTTASRSQKLKLRVQNIEAALPPIEKAILAQNSHI HFAYTAGSEWHPRLRNEQNHFIYNDLPRFIMDSYEECRDPPRFHILDKFDTGGPGSCLKRYSDPTFFRRASGGFKEHHAEKVQRDKKARKIKKKRSLQRK GSSLQNGSISSHSERSQFFQPTVNGRSSSSHTASTIDLPLKSEIGDHSNSIDSGNGSNHIECVFRPSSSAQLEEQKSNGFSSRSFQGDDSRDSGFSEEQS RVVDDTSLHCSSPNQIHDRPHGVTWDEKEEREDPGVADDSFLHCSSPKQIHHRSPGVTWVGKEEHKEPGVADDSFLHGSSPELIPISSSCRTCEEKAEGA QPETHKGSLPRSSLEWLPPGFSCVSWDEKEELSEAEIQHYDGDEAPDVLTVDSVLDMRESGTNTEIHHPTDLRFEDDNVRGPSFTAVTLLEDVESETDNF MDALNSIDTESESELDYQTKHEVKEVECANRDNEGLAVTSGQTNQEVKQVECAIDERRTEDQQDEVSGATSGHHPHHDSYSPPDFSSNHGMASDVLIPVP LVSPDEEQTHSSESSSTASGSESDILASTTADAPGASKVESPVLNRSSVIVVNGVKELLAGAVLKDSGKPRQSSAAELSQVDGPSVVVVKEVEEPLAGIV LTDPRKPRESSITEFSHLEPIRFWTNGGLLGLQPSKPPDFNGSNPGSQSSATNTSEVVNTPIPSNNTDSSERPAGSRISESCHDVNVAKAKDAIDPNYRS RFHPYDRGLNANSPVAPGNGLPLGSFIKFTTSGGASHESDGYPSQNMFGLGQRLLANGFGRRISLLPSSESELTSSLPQPAESEKKGRQPLIKFQPSQPD DLNIRFGHKPSDAGYLTSSPPVEHMKLSFQPTCGSEASKLQLKFPDGGCCNESTTDMFPSFQLVPDAATRRNDAISDSDDDTFCRSSPYLSDDCLSHHSD TGSDQWEAGQSPESVHNSDQDVLCAFESVPAPLKLGDMETNGLSTSPADETELDLPSFDSVKLPFEQVRQKEDRLSSPLPPPLPPAQWRLSKESKPASDT IVSKPQAIPDAPQIAFVPKLVATPTTQQPKPAPATDQQAHPVIVPFTPNRKDEPKLNWLKDDNPLTNGKVMHEQEDFLQQIRSKSFSLRPTAPVKTAVAG ATAIDTVTEILKKASAIHQVVASDVDDDDAWSDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	0	1
AT3G01810			unknown protein		Lus10015805 [exp]	3.0	0.9276
AT2G34150		ATSCAR1, WAVE1,...	WISKOTT-ALDRICH SYNDROME PROTE...		Lus10013904 [exp]	4.7	0.8777
AT5G42710			unknown protein		Lus10010806 [exp]	5.7	0.9247
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	6.9	0.9224
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	7.7	0.9198
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	8.0	0.9127
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	8.2	0.9262
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	10.9	0.9143
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	11.0	0.8706
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	13.5	0.8982

Compare expression of checked genes

Lus10001897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.