Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23820 154 / 3e-45 Pectin lyase-like superfamily protein (.1) AT5G41870 135 / 3e-38 Pectin lyase-like superfamily protein (.1) AT3G62110 133 / 5e-37 Pectin lyase-like superfamily protein (.1) AT4G33440 120 / 3e-32 Pectin lyase-like superfamily protein (.1) AT4G23500 116 / 1e-30 Pectin lyase-like superfamily protein (.1) AT3G48950 113 / 9e-30 Pectin lyase-like superfamily protein (.1) AT2G23900 108 / 8e-28 Pectin lyase-like superfamily protein (.1) AT3G61490 105 / 9e-27 Pectin lyase-like superfamily protein (.1.2.3) AT3G42950 99 / 1e-24 Pectin lyase-like superfamily protein (.1) AT1G19170 99 / 2e-24 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003890 [exp] 189 / 1e-58 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 173 / 2e-52 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 163 / 1e-48 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 131 / 2e-36 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009972 [exp] 125 / 7e-35 AT3G62110 446 / 2e-156 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 122 / 6e-33 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 121 / 2e-32 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 111 / 4e-29 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10039279 [exp] 106 / 5e-27 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139100 [exp] 167 / 4e-50 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 130 / 3e-36 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 126 / 1e-34 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 122 / 4e-33 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 119 / 6e-32 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 109 / 2e-28 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 109 / 2e-28 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 107 / 9e-28 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.008G211500 [exp] 106 / 2e-27 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 106 / 2e-27 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10001899 pacid=23157114 polypeptide=Lus10001899 locus=Lus10001899.g ID=Lus10001899.BGIv1.0 annot-version=v1.0 ATGACTCTTTACTTGGCTAGAGGAGCCACCATTAAAGACACTCAGTTGTGGTCGATATTTGCTACTACAGGAAACGTGGAACTTTTAGTTGCTCCTTTAC CGTTGTATGGACGGGGAGAGAGCTCCATGGTGGAAGGTGAGAATGGCACAATTAATGGGCAAGGAGGTGTTTGGTGGGATATGTGGAGGCAGAGAACTGT TCAATATACAAGACCGAGTCTGGTCGATTTGATAAACTCGAAAGGCATTATCATATCAAATGTGATTTTCAAGAATTCTCCCTTTTGGAAAATTCACCCT GTTTATAGCAGTCACATTGTAATACGATATGTGACCATCTTGGCTCCCCACGACTCACCTAATACTGATGGAGTCGATCCAGGTAAATTCTCCATTACTG GTCTATGGTCTATGGACATTAAAAAAAATGGATTACACTTGAAGGCGAGTTTAAAGATAAACTCGGTAAAATCGAGGTCGTATTCATTGGTTTCGTTTCG AGTATTACTTCGGAAAGTGTGA
AA sequence Show only first row Show all	>Lus10001899 pacid=23157114 polypeptide=Lus10001899 locus=Lus10001899.g ID=Lus10001899.BGIv1.0 annot-version=v1.0 MTLYLARGATIKDTQLWSIFATTGNVELLVAPLPLYGRGESSMVEGENGTINGQGGVWWDMWRQRTVQYTRPSLVDLINSKGIIISNVIFKNSPFWKIHP VYSSHIVIRYVTILAPHDSPNTDGVDPGKFSITGLWSMDIKKNGLHLKASLKINSVKSRSYSLVSFRVLLRKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	0	1
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	1.7	0.9063
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	2.8	0.8617
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	4.9	0.8151
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	8.2	0.8130
AT1G74160			unknown protein		Lus10034677 [exp]	9.2	0.8027
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	11.1	0.7449
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	12.2	0.7756
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	12.3	0.7524
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	12.6	0.8118
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	15.2	0.7686

Compare expression of checked genes

Lus10001899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.