Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 143 / 4e-38 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 141 / 2e-37 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 139 / 1e-36 Leucine-rich repeat protein kinase family protein (.1.2) AT3G02880 132 / 3e-34 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 125 / 4e-32 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 125 / 9e-32 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 123 / 4e-31 RKL1 receptor-like kinase 1 (.1) AT5G16590 122 / 7e-31 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 121 / 2e-30 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G17840 117 / 6e-29 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003891 [exp] 522 / 0 AT5G58300 138 / 6e-37 Leucine-rich repeat protein kinase family protein (.1.2) Lus10010973 [exp] 145 / 5e-39 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 144 / 1e-38 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10031909 [exp] 139 / 1e-37 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10021673 [exp] 139 / 7e-37 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002299 [exp] 134 / 1e-36 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10035012 [exp] 137 / 6e-36 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031337 [exp] 135 / 3e-35 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10004040 [exp] 134 / 7e-35 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138900 [exp] 308 / 2e-104 AT3G08680 142 / 2e-37 Leucine-rich repeat protein kinase family protein (.1.2) Potri.004G086100 [exp] 149 / 2e-40 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 147 / 8e-40 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G130600 [exp] 147 / 1e-39 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 143 / 4e-38 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 141 / 2e-37 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 135 / 1e-35 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G044600 [exp] 132 / 2e-34 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.013G158800 [exp] 132 / 2e-34 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G035500 [exp] 132 / 3e-34 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001900 pacid=23157109 polypeptide=Lus10001900 locus=Lus10001900.g ID=Lus10001900.BGIv1.0 annot-version=v1.0 ATGGACGACTTGCCTCTTGTCTTCTGTGGCGGTGGTGGTGGCCAGCCGGCTTCTTGCCTGAGCTTGAGGGAGGTTTTGAGGGCTTCTGTATGTGTGATGG GAGAGAGCCGTCTTGGGTTGACGGAGAAGTCGGTTCTATTGGACGGGAAAGTGTACGCCGTTAAGAGATTCAGGAAGGTTAGTCTAGGGAGGGCAGAGTT CGGGAGGAGAATTCAAAGGCTGGCAGAGGTTAGTCAGAAGTGTGAGTATCTTGTTCCTGTTAATGCCTACCTTTACGCCAAGAGGATCAAGTTCTTGCTC TGCCATTACTATCCCATGGGAAGCCTCGCTGATTTACTTGCTGGAGGCAGAGAACGTGGAAACACTGTCCTGAATTGGAATCAGAGGCTAACGATTGCTC TAAGCGTTTGTCGGGCGATTGCCTTCATCCACACTCGTTGCCCTTCTCATGAAAGTGGTAACATGACGACCTTACAAATGAATGTCCATGGCAATATCAA GGCCTCTAACGTTATGATCAACGTAGACTTCACCGCCTGTCTGTCCGACCATGGCTTCATCCAATTGGCCGATCGTCATCAGCAGCAGCAGCAGCTCGAC AACATTATGTGTCAACAGAAGTACGTGGATGGACCGATACTGTTTGAAGCTAAGTTGTACCAGAAGAATGACATCTACAACTATGGGATGATGTTACTGG ACATGCTTGGCGGGCCAGAGGCAGCAGGAAATAGAGAATGCATTGTGAAGAGGAAGGAAGAGATGACGACGAAAGAAGGAGGAATAAGTAGGTGGTTAGA AGATCAGTTGCTTGAGTTTAAAGTAGAGGGGAAGGAAATGGAGCAAGCTTTGCAAGTGTTAGATATTGCATTGGCTTCCACTAATAAGTTGGCTGAGGGT AGGCCTTCCATTCAACAGATTCTGAATTTCTTTGAAGATGTCATTGCTTGA
AA sequence Show only first row Show all	>Lus10001900 pacid=23157109 polypeptide=Lus10001900 locus=Lus10001900.g ID=Lus10001900.BGIv1.0 annot-version=v1.0 MDDLPLVFCGGGGGQPASCLSLREVLRASVCVMGESRLGLTEKSVLLDGKVYAVKRFRKVSLGRAEFGRRIQRLAEVSQKCEYLVPVNAYLYAKRIKFLL CHYYPMGSLADLLAGGRERGNTVLNWNQRLTIALSVCRAIAFIHTRCPSHESGNMTTLQMNVHGNIKASNVMINVDFTACLSDHGFIQLADRHQQQQQLD NIMCQQKYVDGPILFEAKLYQKNDIYNYGMMLLDMLGGPEAAGNRECIVKRKEEMTTKEGGISRWLEDQLLEFKVEGKEMEQALQVLDIALASTNKLAEG RPSIQQILNFFEDVIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	0	1
AT4G35980			unknown protein		Lus10009388 [exp]	1.0	0.9185
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	3.3	0.8537
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	3.5	0.8942
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	4.5	0.9130
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	4.9	0.8732
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	7.3	0.8828
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024833 [exp]	8.7	0.8366
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	8.8	0.8784
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	8.9	0.8838
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	9.2	0.8402

Compare expression of checked genes

Lus10001900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.