Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11070 209 / 2e-65 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT4G23810 174 / 9e-52 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT5G24110 149 / 2e-42 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT2G46400 124 / 4e-33 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT2G40750 105 / 7e-26 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT3G56400 98 / 3e-23 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40740 97 / 7e-23 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT5G01900 84 / 2e-18 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT1G66600 81 / 1e-17 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT5G45260 82 / 5e-17 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003894 [exp] 576 / 0 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2) Lus10032372 [exp] 357 / 9e-123 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10023099 [exp] 357 / 9e-123 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10039331 [exp] 159 / 8e-46 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10001062 [exp] 151 / 7e-43 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10012870 [exp] 101 / 1e-24 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025133 [exp] 100 / 9e-24 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 99 / 2e-23 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029022 [exp] 97 / 2e-23 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138600 [exp] 327 / 2e-111 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.001G092900 [exp] 324 / 2e-110 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.012G031700 [exp] 207 / 5e-64 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.014G096200 [exp] 197 / 2e-60 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.002G168700 [exp] 194 / 3e-59 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.006G109100 [exp] 139 / 2e-38 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 108 / 4e-27 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 102 / 6e-25 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090400 [exp] 98 / 5e-23 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 94 / 1e-21 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10001902 pacid=23157103 polypeptide=Lus10001902 locus=Lus10001902.g ID=Lus10001902.BGIv1.0 annot-version=v1.0 ATGGCAGGAGGGTGGACCTGTGAGCAGAGGACAGCACTGGTAAATGAGCTCATCCAAGGGATCGAATTCGCTAAACAGTTGAGATTCCATCTCAAGGACA AGGAGGAGTCATCTGCTGTTGAGGTTGCAGATGGTTTGGTTGAGAGAATCCTGTCGTCTTATGACAAGGCTTTGCTGATTCTCAATTGGAGTACTGGACC AATGGGACAACAACCCCTTCAAGCAGCAACTGGTTCTGGTGTTCCTGGCTCTCCATTGTCTTGGAATGGAAGTCCTCCGAGGAGTGATGTTTTTTATGGA ACCAAGGATAATCAAGTTCCTGATTATGCCTCCAAGAAAAGAAAGACAGTGGCCAGATGGACAGATCATGTTAGAATTAGCTCAGAGAACGGCTTAGAAA GTTGTATTGATGATGGCTATAGCTGGAGGAAGTATGGTCAGAAAGACATACTAGGAGCCAAATATCCCAGAAGCTATTACAGGTGCACGTACAGAAGCAC TCAAAACTGCTGGGCAGTAAAACAAGTTCAAAGATCAGATGAAGATCCAACCATATTTGAGGTGACATATAGAGGGACCCACACTTGTTCATATGGACAG CAAACAGAGAAACAAGAACAAAAGCAAAGCATCGACTGCAGCAGCAGCAGCAATCATCAGCTACGTCCTCAAGACGACTTGCAAGAGGTTATGGAAAACA AAGAGACGATCCCCTTCACTTTCCCTACCACATATCAACTCCCAAACAACTCATTTCTATCTCCAGCCACACCTCCAGAACCAAGTTACAGACCTGTTTC TAGATTCGGAGAGACTCAAACGTCCTTGCAGCCTTTAAATTCGGATTTTGCTGATATAATTTCAGCTTATACTTCAGTCAGCTCCACCAATTCTCCTATC CTTGACTTGGACTGCCAACTTGATTCATTCGAACTTGTCCCCAACTTCTCATATGACCCAGAATTTTTCCCTTAA
AA sequence Show only first row Show all	>Lus10001902 pacid=23157103 polypeptide=Lus10001902 locus=Lus10001902.g ID=Lus10001902.BGIv1.0 annot-version=v1.0 MAGGWTCEQRTALVNELIQGIEFAKQLRFHLKDKEESSAVEVADGLVERILSSYDKALLILNWSTGPMGQQPLQAATGSGVPGSPLSWNGSPPRSDVFYG TKDNQVPDYASKKRKTVARWTDHVRISSENGLESCIDDGYSWRKYGQKDILGAKYPRSYYRCTYRSTQNCWAVKQVQRSDEDPTIFEVTYRGTHTCSYGQ QTEKQEQKQSIDCSSSSNHQLRPQDDLQEVMENKETIPFTFPTTYQLPNNSFLSPATPPEPSYRPVSRFGETQTSLQPLNSDFADIISAYTSVSSTNSPI LDLDCQLDSFELVPNFSYDPEFFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	0	1
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	2.2	0.9438
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	3.5	0.9291
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	4.9	0.9231
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	5.2	0.9286
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	5.9	0.9204
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	6.0	0.9124
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	6.9	0.9167
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	7.7	0.9082
AT5G48290			Heavy metal transport/detoxifi...		Lus10016062 [exp]	8.8	0.9055
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	9.8	0.9193

Compare expression of checked genes

Lus10001902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.