Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64350 421 / 7e-149 SEH1H Transducin/WD40 repeat-like superfamily protein (.1) AT3G01340 79 / 1e-16 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G30050 71 / 7e-14 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003896 [exp] 589 / 0 AT1G64350 434 / 4e-154 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037571 [exp] 68 / 1e-12 AT2G30050 523 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011429 [exp] 67 / 2e-12 AT2G30050 525 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138300 [exp] 459 / 7e-164 AT1G64350 457 / 4e-163 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G068900 [exp] 70 / 2e-13 AT2G30050 526 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G100400 [exp] 68 / 9e-13 AT2G30050 517 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G141300 [exp] 54 / 4e-08 AT2G30050 465 / 2e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.001G093401 [exp] 49 / 2e-07 AT1G64350 39 / 7e-05 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G221000 [exp] 43 / 0.0002 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10001904 pacid=23157118 polypeptide=Lus10001904 locus=Lus10001904.g ID=Lus10001904.BGIv1.0 annot-version=v1.0 ATGGAGAAGTCACTAGCAACGCTTGATAAAGGTACGACCTGCTCATCCTGGAACTACTCCGGTGACCGTTTGGCCACCGGATCCATCGACGGAACGCTCT CCATCCTCGATTCAGAGAATCCTGCGTCTTCCTCCTTCAACTGTACCTCCAAAGTTAAGGTGGGTGAGGGTAGTGTTGTCAAGGTCGTATGGATTCCGCC ACTATTTGGCGACGCAGTGGCTTGCATTGGCAAGAATGGAAGCATGTATTTATGGGAGGAGGTGGCTGAAGATGGAAAAGCTGTCGAGTGGAAGCATTGC AAAAGCTTCCAGAACAACTCTATTAAAGTTTTGGATGTTCAATTTGGACTCCTCCGCGCAAGTTTGAAAATGGTTGTTGCATATTCAGATGGTCATGTGA AAGTGTACGAGCTCTCCGATCCATTGAATTTAAAGAATTGGCAACTTCAGGCTGAATTTCAGAATCTTACTGATTCAGTAGCTAAATTGGCTAAGGTTTC ATGCTCCTCTGCTTCCATTTCTTGGAATCCGCAAAGTGGCGATAACCAGGAATTGAGCTTTGTTTTGAGCTTCAATACAGACACGACACTACTTAACTCT TCAAAGGTTTGGGAATTTGATCCTGACCATCAAAGATGGGTTCCAGTAGCTGAGCTGGCTTTGCCTGAAGACAGAAATGATCAGGTGTTCTGTGTTGCAT GGGCAGCGAACATTGGCAGGCCATATGAGATCATAGCTGTTGCTTCCAATAAGGGTATCGCTATATGGCATCTCGGAACGAACCCTGACACGGAAGGCAG ACTTGCAGTGGAGAGGGTTGCATTGCTTTCTGGCTTTGAAGGAGAGGTGTGGCAAATGGAATGGGATATGAGTGGAATGACTTTAGCAACGACAGGGAGT GATGGAATGGTGAGACTGTGGCAATCCAACTTGAATGGTGTTTGGCATGAGCAAGCAGCATTTGAACCAACTACTTAG
AA sequence Show only first row Show all	>Lus10001904 pacid=23157118 polypeptide=Lus10001904 locus=Lus10001904.g ID=Lus10001904.BGIv1.0 annot-version=v1.0 MEKSLATLDKGTTCSSWNYSGDRLATGSIDGTLSILDSENPASSSFNCTSKVKVGEGSVVKVVWIPPLFGDAVACIGKNGSMYLWEEVAEDGKAVEWKHC KSFQNNSIKVLDVQFGLLRASLKMVVAYSDGHVKVYELSDPLNLKNWQLQAEFQNLTDSVAKLAKVSCSSASISWNPQSGDNQELSFVLSFNTDTTLLNS SKVWEFDPDHQRWVPVAELALPEDRNDQVFCVAWAANIGRPYEIIAVASNKGIAIWHLGTNPDTEGRLAVERVALLSGFEGEVWQMEWDMSGMTLATTGS DGMVRLWQSNLNGVWHEQAAFEPTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10001904 [exp]	0	1
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009653 [exp]	2.2	0.8873
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	2.8	0.8828
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	3.5	0.8617
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	3.9	0.8731
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10033646 [exp]	5.2	0.8553
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	7.5	0.8713
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	7.7	0.8704
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	7.9	0.8570
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10004362 [exp]	9.0	0.7941
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	10.2	0.8555

Compare expression of checked genes

Lus10001904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.