Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01420 391 / 4e-132 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT4G01070 387 / 2e-130 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01390 377 / 2e-126 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 266 / 7e-84 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 260 / 3e-81 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G26310 251 / 6e-78 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 244 / 1e-75 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 244 / 5e-75 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 233 / 5e-71 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT1G07260 229 / 1e-69 UGT71C3 UDP-glucosyl transferase 71C3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001906 [exp] 777 / 0 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 753 / 0 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003897 [exp] 414 / 5e-144 AT4G01070 218 / 1e-67 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 389 / 5e-131 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 379 / 2e-127 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 375 / 4e-126 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 372 / 8e-125 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 325 / 3e-106 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024037 [exp] 278 / 7e-88 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138200 [exp] 452 / 9e-156 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 421 / 9e-144 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 407 / 9e-139 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 377 / 1e-126 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 313 / 2e-101 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030300 [exp] 295 / 1e-94 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G030500 [exp] 294 / 4e-94 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G029800 [exp] 285 / 8e-91 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.007G030400 [exp] 276 / 1e-87 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.004G069600 [exp] 268 / 2e-84 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10001905 pacid=23157106 polypeptide=Lus10001905 locus=Lus10001905.g ID=Lus10001905.BGIv1.0 annot-version=v1.0 ATGGAAGATGTGGTCAGTACCATCTCACGAAAAGCAAATCTCCGGGTGGTGATGGTGCCTTCCCCAGGCCGCGGCCACCTAATTCCCTTTGTCGAACTAT CCAAACGCCTCCTCCTCCGCCACAATTTCGCCATCACCATTCTTATTCCTGACAATGGCTCCGACATGATACCCCAACGCCAATTCCTCCAATCCCTCAA CCTCCCACCCACCATTTCCCCTCTTTACCTTCCTCCGGTTAGCTTGTCCGACCTCCCCTCCGATGCTGACTCCATCACCCGCGTCCCCCTTACCGTGATT CGCTCTCTTCCGGCCATCCGCGACGCCATAATTAACCTCCAACACTCAGGCGAAGGCCTATGCGGCCGAGTGGTAGCCGTTGTCGTCGATTTCCTAGGCG CAGACGCCCTCCAGGTGGCCACCCAGCTTCAAATCCCTCCCTATGTCTTCTACACGTGTAGCGCCTTCCACTTGACTCTAGGCTTGAATGCCCCTCAACT CCTCCACCCGACCCACCAGGAAGACTCGACCAAACTGCTAAAGCTGCCCGGTTGTATCCCGCTTTTGGGTGCGGATCTTCCTGAACCGTATATCGACAAG AAGAAAGACGCTTACAAGTGGATGGTCCACTCCCACGAACGCATCTCCTCTGATGCCGTAGGAATCATAATCAATAGCTTTGTGGACTTGGAGAGTGATA TTTTCAAAGCTTTGACTGAGGAACGCTTTCGAACCGGATCCGGGCCTACGGTTTACCCCATTGGCCCACTAAAGCGGCTCGATTCTGATGAGGATTTAAA CCAGTTTAGCAACGAATCAATTGACTGTTTGGAATGGTTGGATAAGCAGCCAGAATCCTCTGTACTCCTCATTTCATTTGGAAGCGGGATTGGCGCGAGA CAGTCTAAGGCCCAGTTTGACGAATTAGCCCATGGTCTGGCAATGAGTGGGAAGAGATTCATTTGGGTGGTTAAACCACCAGGTAATGATGTCGTTCCCT GGAACTCGAGTTTCTTACCCGAGGGCTTTTTGAAAAAGACCAAAGGGGTTGGTTTAGTGATTCCCGACTGGGTACCTCAGATTCGAATCCTAAGCCACGG TTCAACCGGTGGGTTCATGAGCCATTGCGGGTGGAACTCGAGTTTGGAGAGCATAACCAATGGGGTGCCGGTTCTTGCCTGGCCTCAGCACGCAGATCAG AAGATGAATGCAGCGTTGTTGGTAGAGGATGCCAAAGTTGCTTTGAGGGTAGATCAAAGTAGTGGTGAAGATGGGATAGTTGGGAGAGAGGAAATTGCTC GATATGTGAAGGCTGTGTTGGATGGGGATGAAGCGAAGTTGCTTAGAAAGAAAATGAGGGAATTGAAAGTTGCTGCTAACAATGCAACCGGAAACGATGG GTCGTCCACCAAGTCGTTGGATGAAGTGGCGAACCTCTGGAAGAATCAGAATCCGTATTAA
AA sequence Show only first row Show all	>Lus10001905 pacid=23157106 polypeptide=Lus10001905 locus=Lus10001905.g ID=Lus10001905.BGIv1.0 annot-version=v1.0 MEDVVSTISRKANLRVVMVPSPGRGHLIPFVELSKRLLLRHNFAITILIPDNGSDMIPQRQFLQSLNLPPTISPLYLPPVSLSDLPSDADSITRVPLTVI RSLPAIRDAIINLQHSGEGLCGRVVAVVVDFLGADALQVATQLQIPPYVFYTCSAFHLTLGLNAPQLLHPTHQEDSTKLLKLPGCIPLLGADLPEPYIDK KKDAYKWMVHSHERISSDAVGIIINSFVDLESDIFKALTEERFRTGSGPTVYPIGPLKRLDSDEDLNQFSNESIDCLEWLDKQPESSVLLISFGSGIGAR QSKAQFDELAHGLAMSGKRFIWVVKPPGNDVVPWNSSFLPEGFLKKTKGVGLVIPDWVPQIRILSHGSTGGFMSHCGWNSSLESITNGVPVLAWPQHADQ KMNAALLVEDAKVALRVDQSSGEDGIVGREEIARYVKAVLDGDEAKLLRKKMRELKVAANNATGNDGSSTKSLDEVANLWKNQNPY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	1.0	0.9477
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	1.4	0.9335
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	3.5	0.9145
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012980 [exp]	4.0	0.9021
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10018540 [exp]	4.5	0.8524
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	4.9	0.8943
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	5.3	0.8931
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	5.7	0.8886
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	8.7	0.8980
					Lus10010603 [exp]	9.8	0.8386

Compare expression of checked genes

Lus10001905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.