Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 405 / 1e-137 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 400 / 1e-135 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 390 / 7e-132 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 272 / 7e-86 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 265 / 4e-83 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 264 / 4e-83 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 258 / 1e-80 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 254 / 4e-79 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT1G07250 237 / 2e-72 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT3G16520 233 / 5e-71 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003900 [exp] 883 / 0 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 740 / 0 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10003897 [exp] 400 / 2e-138 AT4G01070 218 / 1e-67 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 395 / 1e-133 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 390 / 1e-131 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 367 / 1e-122 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 363 / 2e-121 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 354 / 1e-117 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024035 [exp] 291 / 7e-93 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138200 [exp] 469 / 1e-162 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 418 / 1e-142 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 410 / 1e-139 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 373 / 2e-125 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 322 / 4e-105 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 298 / 5e-96 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030300 [exp] 292 / 1e-93 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G030400 [exp] 285 / 1e-90 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 282 / 9e-90 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.004G069600 [exp] 279 / 1e-88 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10001906 pacid=23157107 polypeptide=Lus10001906 locus=Lus10001906.g ID=Lus10001906.BGIv1.0 annot-version=v1.0 ATGGAAGATGTGGTTGCTGCCGCCTCTCCAGAACCAAATCTCCGAGTGGTAATGGTGCCTTCCCCGGGCCATGGCCACCTAATTCCTTTTGTCGAACTAT CTAAACGTCTCCTCCTCCGTCACAATTTCTCCATCACCATTATTGTCCCAGATAATGGCTCCGGCATGATACCCCAACGCCAACTCCTCCAAACCCTCCC ACCCACCGTCTCCCCTCTTTACCTTCCTCCAGTCAGCTTGTCCGACGTCCCCTCTGATGCCAACGTCATCACCCGCGTCACTCTCACCATGATTCGCTCC CTTCCGGCCATCCGCGACGCCTTAATTCACCTCCAACACGGCAATCGCGGCCGAGTGGTTGCTGTCGTCGCCGATTTCCTCGGTGCAGACGCCCTCCAGG TGGCTTCACAGCTCCAAATCCCTCCCTACGTCTTCTACACATGTAGCGCCTTCCACCTGACTCTAGGGCTGAAAGCCCCTGAACTCCACCAGACCCACCC GGAAGAATTCAGGGACTCGAGTGAACCGTTAAAGCTACCCGGTTGTGTCCCGTTTCCCGGTCCGGATCTTCCTGACCCGTATCTTGACAAGAAGAAGGAC GCTTACAAGTGGATGCTCCACGTCCACGAACGCATCTCCAATGATGCCGCAGGAATAATGATCAATAGCTTTATGGAGTTGGAAAGTGAGATTTTCAAAG CTTTGACTGAGGAACGCTCTCGAACCGGATCTGGGACCGCTGTTTACCCCATAGGCCCAGTCCCGCGGCTCGAATCCGACGAGGATTTAGCCAAATTGAG CAACGAGTCCATTGAGTGTTTGAAATGGTTGGATAAACAACCAGAGTCCTCTGTTCTCTTCATTTCATTTGGAAGCGGCGGGAAACAGTCTCAAGTTCAA TTCGACGAATTAGCCCACGGGTTAGCAAAGAGTGGGAAGAGATTCATCTGGGTGGTTAAACCACCGGGGAACAACATCGTCGAAGTGACCGATTCCATCG TTCCGGCGAGCTTCTTACCCGAAGGGTTTTTGGAAAAGACCAAAGGGGTGGGTTTAGTGATTCCCGGTTGGGCACCACAAATTCGAATCCTGAGCCACGG TTCAACAGGTGGATTCATGAGCCATTGCGGGTGGAACTCGAGCTTAGAGAGCATAACCAATGGGGTGCCGGTGCTGGCATGGCCGAACCACGCGGAACAG AGGATGAATGCGGTGTTCTTGGCAGAGGATGCGAAAGTTGCTTTAAGGATTGATGAAAGCAGCGGGAAAGATGGGATAGTTGGGAGAGAGGAAATTGCTC GATATGTGAATGCTGTGTTGGATGGGGAAGAAGGTAAGTTGCTCAGAAGGAAAGTGAAGGAATTGAAGGCTGCTGCTAACACCGCCATTGGAAACGATGG GTCGTCCACGAAATCGTTGGATGAAGTGGCGAACCTGTGGAAAATTCAGAATCCGTAG
AA sequence Show only first row Show all	>Lus10001906 pacid=23157107 polypeptide=Lus10001906 locus=Lus10001906.g ID=Lus10001906.BGIv1.0 annot-version=v1.0 MEDVVAAASPEPNLRVVMVPSPGHGHLIPFVELSKRLLLRHNFSITIIVPDNGSGMIPQRQLLQTLPPTVSPLYLPPVSLSDVPSDANVITRVTLTMIRS LPAIRDALIHLQHGNRGRVVAVVADFLGADALQVASQLQIPPYVFYTCSAFHLTLGLKAPELHQTHPEEFRDSSEPLKLPGCVPFPGPDLPDPYLDKKKD AYKWMLHVHERISNDAAGIMINSFMELESEIFKALTEERSRTGSGTAVYPIGPVPRLESDEDLAKLSNESIECLKWLDKQPESSVLFISFGSGGKQSQVQ FDELAHGLAKSGKRFIWVVKPPGNNIVEVTDSIVPASFLPEGFLEKTKGVGLVIPGWAPQIRILSHGSTGGFMSHCGWNSSLESITNGVPVLAWPNHAEQ RMNAVFLAEDAKVALRIDESSGKDGIVGREEIARYVNAVLDGEEGKLLRRKVKELKAAANTAIGNDGSSTKSLDEVANLWKIQNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10001906 [exp]	0	1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	6.1	0.9403
AT5G15320			unknown protein		Lus10018064 [exp]	6.5	0.9360
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	9.6	0.9353
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	11.4	0.9330
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	16.0	0.9260
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	16.5	0.9335
AT1G28120			unknown protein		Lus10026630 [exp]	17.1	0.9325
AT3G09280			unknown protein		Lus10017211 [exp]	17.2	0.8494
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10014830 [exp]	18.2	0.9054
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	21.0	0.9292

Compare expression of checked genes

Lus10001906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.