Plant FIBer expression Database

Lus10001907 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41810 117 / 1e-32 unknown protein
AT1G64340 97 / 7e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003901
[exp]
324 / 6e-115 AT5G41810 119 / 3e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G093500
[exp]
135 / 1e-40 AT5G41810 135 / 1e-39 unknown protein
Potri.014G095600
[exp]
40 / 0.0002 AT3G61660 65 / 5e-14 unknown protein
PFAM info
Representative CDS sequence
>Lus10001907 pacid=23157108 polypeptide=Lus10001907 locus=Lus10001907.g ID=Lus10001907.BGIv1.0 annot-version=v1.0
ATGAAGCAGCAAAGGTCTCCTTCCGCAGTGTGGGATTGCGAGAGCAGCCTCTACGATTCGTTCGAGCTGAGATCCTTCGAGAAGCAGCTCTCCTCCGCCA
TCACCTCCCGCGCCCTCTCCATGCCCCATTTATCCTCCGATCGGGTCCGGGTCGCTCCCGTCCTCACTCCCAGTGATGATCCAGTAGTAGTACTGCCCAA
GAAGATCAACACCACCATGTCCTCCAAGATTTCCAAGTCGGTCCAGCGGTTTTTTAAGTCGGTGTTCATCGTACGGTCTAACCATCGCCAAAATAAGCAG
GGCTCGAATAAGGATCAGAGGGCCTACCTGCGGGTCAAGGAACGGATGGCGACGACTGGGGATCAGGAATACCGTTACCTTGTGTACGATAAGTCCGGGG
CGCTGACCACCATCCCAGAGGGTCCAGAAAGCGATTTCGGGCTCTCTCCGGACATTAAATCCCTGGTCAGAAAGACCGCCTCCGATAGGTTCAGGGCGGC
TCGCGTGCCAAACGCTGGTCATGGTATTTCGTGTGCTTAA
AA sequence
>Lus10001907 pacid=23157108 polypeptide=Lus10001907 locus=Lus10001907.g ID=Lus10001907.BGIv1.0 annot-version=v1.0
MKQQRSPSAVWDCESSLYDSFELRSFEKQLSSAITSRALSMPHLSSDRVRVAPVLTPSDDPVVVLPKKINTTMSSKISKSVQRFFKSVFIVRSNHRQNKQ
GSNKDQRAYLRVKERMATTGDQEYRYLVYDKSGALTTIPEGPESDFGLSPDIKSLVRKTASDRFRAARVPNAGHGISCA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G41810 unknown protein Lus10001907
[exp]
0 1
AT1G01490 Heavy metal transport/detoxifi... Lus10017520
[exp]
1.0 0.9705
AT3G15760 unknown protein Lus10030098
[exp]
2.0 0.9567
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Lus10013830
[exp]
2.8 0.9625
AT3G06810 IBR3 IBA-RESPONSE 3, acyl-CoA dehyd... Lus10020908
[exp]
3.0 0.9584
AT5G47720 Thiolase family protein (.1.2.... Lus10038749
[exp]
3.7 0.9540
AT2G35270 AT-hook GIK, 2-ATH, AHL... GIANT KILLER, Predicted AT-hoo... Lus10030966
[exp]
3.9 0.9558
AT3G10915 Reticulon family protein (.1.2... Lus10034224
[exp]
4.2 0.9545
AT5G65495 unknown protein Lus10002656
[exp]
4.5 0.9524
AT3G13620 Amino acid permease family pro... Lus10013757
[exp]
5.3 0.9439
AT3G46540 ENTH/VHS family protein (.1) Lus10016556
[exp]
5.9 0.9283

Lus10001907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.