Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11080 324 / 4e-106 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 320 / 1e-104 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT3G28730 59 / 7e-09 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) AT4G35570 45 / 2e-05 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT2G17560 44 / 4e-05 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT1G20696 42 / 0.0003 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT3G51880 41 / 0.0006 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20693 40 / 0.0006 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003904 [exp] 650 / 0 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 407 / 6e-138 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033954 [exp] 219 / 1e-65 AT4G11080 283 / 5e-91 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10023091 [exp] 201 / 3e-61 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10023090 [exp] 176 / 1e-51 AT4G23800 195 / 1e-59 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) Lus10033951 [exp] 174 / 3e-49 AT4G11080 214 / 5e-65 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10042065 [exp] 49 / 9e-06 AT3G28730 843 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Lus10018073 [exp] 48 / 1e-05 AT3G28730 850 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Lus10030738 [exp] 46 / 1e-05 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G093700 [exp] 386 / 8e-130 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 385 / 3e-129 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.005G101400 [exp] 46 / 7e-06 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 47 / 8e-06 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.004G124000 [exp] 47 / 3e-05 AT3G28730 875 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Potri.002G009000 [exp] 44 / 4e-05 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 44 / 4e-05 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.017G078500 [exp] 44 / 0.0002 AT3G28730 836 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Potri.008G067400 [exp] 42 / 0.0002 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10001909 pacid=23157104 polypeptide=Lus10001909 locus=Lus10001909.g ID=Lus10001909.BGIv1.0 annot-version=v1.0 ATGGCGGACGTAGCAGTGCCTTCCTCCTCCCCGATTCCCAACAAAAAGGGCAGGAAGCCAAGCAAAAAAGTTCTGAAGCCGAAGGCAGCATCGACGAACG ACGCCAACATCCAGGCTCAGGAGCTCACTGAGTCCTCTCCTGCTGTTCCTCCTCCTCTCTCCGATCTGATGAAAGAGAATCACCCAAGCCTCTCTTCCAC CAAGAAGGGAAAAGGAAAGACGGCCAAAGGTGCTAAGCAGGATTCCTTCCACAAGGAGTTGGAACAGATGCAGGAAATGCTTAAACAATTGAAGCTGGAG AAGGAGAAGACCGAAGAGATTCTGAAGGAGAAAGACGAGATGTTGAAAGCCAGAGACGAAGAGCTGGAGAACAAGGGGAAGCAGCAAGAGAAGATGCAGG CGGAGCTTAAGAAACTGCAGAAGTTGAAGGAGTTCAGGCCCAATCTCAACTTCCAGATCTTGAAAGATAACCAGCAGCCAGACAAGAAGAGCAAGAAGAA AAAGGGGAGCGGGTCTGAAGCGAAAAGGCCATCTCCGCCTTACATCCTCTGGTGCAAAGATCAGTGGAATGAGATTAAGAAGGAAAACCCTAATGCTGAG TTCAAAGAAGTATCCAACATTTTGGGAGCCAAGTGGAAGACTGTTAGTGCGGAGGACAAGAAGCCATATGAGGAGAAGTATCAGGTTGAAAAGGAAGCAT ATTTGAAGGTGGCGACAAAGGAGAAACGCGAGACTGAAGCCATGAAGCTCTTGGAAGAGGAGCAGAAACAAAAGACTGCCATGGAGTTGCTTCAACAGTA CCTTCAATTCATACATGATACGGCGGATGACCAAGGGAGCAAGAAGACCAAAAAAGAAAAAGACCCATTGAAACCAAAACAACCCATGTCTGCTTTCTTC ATCTTCTCTAATGAGAGAAGGGCTGCATTGCTTGCTGACAAAAAGAATGTTACTGAGGCTGCAAAGATTGCCAGCGAAGAATGGAAGAACATGACAGAGA AACAGAAATCACCTTATGTAAAGGTAGCTAAGAATAATAAGGACAACTACTTGATTGAGATGGAGGCATATAAGCTGAAAAAGGAAGAAGAAGCCACGAG TCTCATGAAGGAAGAGGAAGAAAATCTAAAACTTCAGAAGCAGGAAGCCATGCAATTGCTGAAGAAGAAGGAGAAAACAGATAACATAATCAAGAAAACC AAAGAAGAGGAACGGCAGAAGAAGCAGAAGAAGAACCAGAACATAGATCCAAACAAGCCAAAGAAACCTGCATCCTCTTTCTTTTTATTCAGCAAAGAAG CAAGGAAAAACATAATGCAGGAACACCCTGAAGTCAACAACACCACAGTTACTGCACGAATCTCTTTGAAGTGGAAGGAACTCAGCAAGGAGGAGAGGCA AATCTGGAATGCCAAAGCTGCAGAAACCATGGATGTTTACAAGAAGGAAATAGAAGAGTACAACAAGTCTTGTGCTGCAGGTGCATCTGCCGAGAATCAA TAA
AA sequence Show only first row Show all	>Lus10001909 pacid=23157104 polypeptide=Lus10001909 locus=Lus10001909.g ID=Lus10001909.BGIv1.0 annot-version=v1.0 MADVAVPSSSPIPNKKGRKPSKKVLKPKAASTNDANIQAQELTESSPAVPPPLSDLMKENHPSLSSTKKGKGKTAKGAKQDSFHKELEQMQEMLKQLKLE KEKTEEILKEKDEMLKARDEELENKGKQQEKMQAELKKLQKLKEFRPNLNFQILKDNQQPDKKSKKKKGSGSEAKRPSPPYILWCKDQWNEIKKENPNAE FKEVSNILGAKWKTVSAEDKKPYEEKYQVEKEAYLKVATKEKRETEAMKLLEEEQKQKTAMELLQQYLQFIHDTADDQGSKKTKKEKDPLKPKQPMSAFF IFSNERRAALLADKKNVTEAAKIASEEWKNMTEKQKSPYVKVAKNNKDNYLIEMEAYKLKKEEEATSLMKEEEENLKLQKQEAMQLLKKKEKTDNIIKKT KEEERQKKQKKNQNIDPNKPKKPASSFFLFSKEARKNIMQEHPEVNNTTVTARISLKWKELSKEERQIWNAKAAETMDVYKKEIEEYNKSCAAGASAENQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	0	1
AT5G12360			unknown protein		Lus10038810 [exp]	1.4	0.9694
AT5G07670			RNI-like superfamily protein (...		Lus10027218 [exp]	2.8	0.9546
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	4.0	0.9423
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	4.6	0.9517
AT5G12360			unknown protein		Lus10039048 [exp]	5.3	0.9512
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	8.4	0.9487
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	10.4	0.9490
AT2G42110			unknown protein		Lus10029282 [exp]	10.5	0.9231
AT5G15510			TPX2 (targeting protein for Xk...		Lus10029190 [exp]	10.7	0.9494
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	10.7	0.9217

Compare expression of checked genes

Lus10001909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.