Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46380 260 / 2e-76 Protein of unknown function (DUF3133) (.1) AT4G01090 204 / 3e-56 Protein of unknown function (DUF3133) (.1) AT3G61670 204 / 4e-56 Protein of unknown function (DUF3133) (.1) AT1G01440 199 / 4e-55 Protein of unknown function (DUF3133) (.1) AT5G05190 72 / 1e-12 Protein of unknown function (DUF3133) (.1) AT2G23460 61 / 3e-09 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT3G56410 56 / 8e-08 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2) AT4G34390 50 / 4e-06 XLG2 extra-large GTP-binding protein 2 (.1) AT1G31930 46 / 9e-05 XLG3 extra-large GTP-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003905 [exp] 1170 / 0 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 263 / 1e-76 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 263 / 2e-76 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10019655 [exp] 56 / 8e-08 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10030508 [exp] 56 / 9e-08 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10000743 [exp] 54 / 3e-07 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10012863 [exp] 49 / 9e-06 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10021012 [exp] 46 / 0.0001 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 45 / 0.0002 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137700 [exp] 324 / 1e-98 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 300 / 7e-90 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1) Potri.014G095700 [exp] 262 / 3e-76 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.007G035200 [exp] 62 / 1e-09 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 61 / 2e-09 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.019G061400 [exp] 50 / 8e-06 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.001G135300 [exp] 44 / 0.0004 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 43 / 0.0006 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF11331 [flax] [poplar] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10001910 pacid=23157117 polypeptide=Lus10001910 locus=Lus10001910.g ID=Lus10001910.BGIv1.0 annot-version=v1.0 ATGAACCCATCTGAGTCCAAGACCTTATCGTCTAGGGAAAAAGCTCGAGTCTTTAGGGAAAGAGCTTCTGATGTGATGATCAACGCTCGTTCAGTTGACA GTAATCATAGTATCATCAACAGAAGGAGGATGATCATGAGAGAGAAGCAAAAGGGTTTCGAGACTAGTTGGGAACATAATGGAGTTTCCGGCACTCACCG TCCATATGTAAGACCTTGGAAGAATCAACATGTTGGTGAGCTTGTTCACAAAAGGGAGGTTGATAGAATGATGGGAGGCGAATGCTCGAACAGTAATTCA TATGGTTATGGGAGGATTAGGAAGGATCATGGTCCGCTTGATGGATCTACTTCTAGAAGAATTGCTAATCTAGAACATGATCGTGCTCAATTGCTGAGGA AGGTGGATGTGTTGAGCCAGAAACTCAACAATACTCCTGGTGGCCATTATGCTGTTTCAGGCAGCGAGCAGTACGGTCATCATGGACATATCCATCAAAT GGAAAGGGCCCCCTTGCCTAATAATGTGATGATTCCAGCACCATTTCCTCGTTCGCAGCAGCAATCCCCTCTTGGCTACTTCTCGAGCAATTTCTCTCAA GAACAGAGGTTTGAATCTCAGCCTGCTGCTTATTCTTGCTCCATGAGTCCCTCTTCACATGGTTATAACACAAGAGGCAATGATTATGGTTTCCATCCGC AAATTCATCCTCGATGGCAAGGCGGGGTCACTTCTAGTGTGGAGGATAACCATCCAAGAAGGAAAGCTGCAGCTCAAACGAATAGAAGACTCTGCCGTCC CATAGCCTGTGGTGCTCCATTTGTTGTCTGCTGTGCTTGTTTTGAGTTGCTTAAGTTGCCTAAAAAGACCGTAAGGCAGGAGAAGAATAAGCTCAAATTG AGATGTGGATCCTGTTCAGTGGTTTTGATGCTTGAATTCCAGAGCAAGAAGTTAATGGTTTCTGTTTGTGAAGAAACAACAGAATCACATGTCAACATTG TTGATGGCTCGTGTGAAAATGGTGCTAATGTTTGTGAAGATTCTGGTGATGTTGAGGTACAATCAACTACTTTAAGCGAAAGTATCCCAGCAGAAGAGCA GGTGCTAACTTGTGAATCTGAGAAGAACGAGGACCATGCTTCTTCATCATCTTCATCAGCGTCTTCTGAGGAAGAGGAGATCCTGGAGGAGATGGTTGTC CTTCGAGAAGTCTCATCTCCCACTGATCTTTCTGTAAAAGACGATGAATCTCCATCAACGAGGACACTGCAATACCAGGAGAATGTGATTGATTCCAGAG AACCAATGAGCCTGCAAAGGAAAGGAGACAGAATCACACACACCAGAGACCAAGCCAACGACAGCAGAATCAGTTCACGACAGAGCTCAAGGAAAGAGGA GGAATTTTCCTTCAATGACTATGTAAACATGGATTCCTCTGTAGACTCCATAGACACGTCCAAATCAAAACCAGCCCCAATTCACAGGTGGATTGAAACA TCCTTGGCTGGGGCGTTCAAGAAAAGCTTGAGGGATCTGGCCAAACCTCCTCAACAAGCAAAGAACAACAGCGTCAACAATAAGAAGGCTAATGTGTTTG TCAATGGGCAGCCAATTCATGAACAAACATTGCTAATGGCTGAGAAGCTAGCCGGGCCAATTCATGCGGGTGACTACTGGTACGATATTCGAGCAGGGTT TTGGGGTGTAATGGGGCAGCCTTGCCTTGGGGTGATTCCACCATTCATAGAAGAGTTCAGCTACCCAATGCCACGAAACTGTGCTGCTGGGAACACAGGG GTGTTTGTGAATGGGAGGGAGCTCCATCAGCAAGACTTGGAACTGCTTTGCAAGAGAGGGTTGCCAACCTTGGAGCACAAGTTTTATACACTGGAAATAG ACGGCAGACTTTATGACAATGACACAGGAAAAGAGCTTCATGGGATTGGCAAACTTGCTCCAACGGTTGAGAAGGTAAAGCGTGGGTTTGGTATGATGGT GCCTTTTGAGAGTGTTGTAGAATGA
AA sequence Show only first row Show all	>Lus10001910 pacid=23157117 polypeptide=Lus10001910 locus=Lus10001910.g ID=Lus10001910.BGIv1.0 annot-version=v1.0 MNPSESKTLSSREKARVFRERASDVMINARSVDSNHSIINRRRMIMREKQKGFETSWEHNGVSGTHRPYVRPWKNQHVGELVHKREVDRMMGGECSNSNS YGYGRIRKDHGPLDGSTSRRIANLEHDRAQLLRKVDVLSQKLNNTPGGHYAVSGSEQYGHHGHIHQMERAPLPNNVMIPAPFPRSQQQSPLGYFSSNFSQ EQRFESQPAAYSCSMSPSSHGYNTRGNDYGFHPQIHPRWQGGVTSSVEDNHPRRKAAAQTNRRLCRPIACGAPFVVCCACFELLKLPKKTVRQEKNKLKL RCGSCSVVLMLEFQSKKLMVSVCEETTESHVNIVDGSCENGANVCEDSGDVEVQSTTLSESIPAEEQVLTCESEKNEDHASSSSSSASSEEEEILEEMVV LREVSSPTDLSVKDDESPSTRTLQYQENVIDSREPMSLQRKGDRITHTRDQANDSRISSRQSSRKEEEFSFNDYVNMDSSVDSIDTSKSKPAPIHRWIET SLAGAFKKSLRDLAKPPQQAKNNSVNNKKANVFVNGQPIHEQTLLMAEKLAGPIHAGDYWYDIRAGFWGVMGQPCLGVIPPFIEEFSYPMPRNCAAGNTG VFVNGRELHQQDLELLCKRGLPTLEHKFYTLEIDGRLYDNDTGKELHGIGKLAPTVEKVKRGFGMMVPFESVVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	0	1
AT5G06440			unknown protein		Lus10016186 [exp]	1.4	0.8821
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	2.4	0.8624
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10018061 [exp]	4.4	0.8223
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	4.7	0.8203
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	4.9	0.8603
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10024880 [exp]	7.9	0.7870
AT1G76070			unknown protein		Lus10021840 [exp]	8.1	0.8508
					Lus10015702 [exp]	11.7	0.8577
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030934 [exp]	13.6	0.7693
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	16.7	0.8461

Compare expression of checked genes

Lus10001910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.