Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55630 294 / 9e-98 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT4G18160 171 / 2e-49 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT4G01840 170 / 3e-49 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT5G46370 158 / 2e-44 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT1G02510 128 / 2e-34 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G46360 102 / 4e-25 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004417 [exp] 245 / 1e-78 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 208 / 1e-65 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 206 / 2e-65 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10029261 [exp] 136 / 3e-39 ND 64 / 2e-14 Lus10004525 [exp] 142 / 7e-38 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10015265 [exp] 144 / 1e-37 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10004538 [exp] 138 / 2e-37 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004611 [exp] 138 / 7e-37 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007200 [exp] 372 / 8e-129 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.001G366800 [exp] 308 / 1e-103 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004600 [exp] 302 / 7e-101 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 246 / 2e-79 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.005G203000 [exp] 181 / 2e-53 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.011G079100 [exp] 180 / 1e-52 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.014G113700 [exp] 179 / 1e-52 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.002G187600 [exp] 177 / 4e-52 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.001G352500 [exp] 174 / 2e-50 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G059200 [exp] 173 / 2e-50 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF07885 [flax] [poplar] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Lus10001912 pacid=23157111 polypeptide=Lus10001912 locus=Lus10001912.g ID=Lus10001912.BGIv1.0 annot-version=v1.0 ATGGCTAGTAATGACAATGATGCTACAAGATCTCTGCTTTCTGATGCAAACGACTCCCCCACAAATGCCACAGAAAGAAATGCAACCTTTCAACGACGAA AATCTAAGCAAGCCGTCAACCACAAATTTGATGACAGCGGTAACACACCACATGAAGAAAATGTCAAGCATAATAATGGGTCTGGTAATCAATGGATAGA CTCATTACTCGGGGTGCAAACACTCAGATTTAATATTGTTTTCATACTGTTATTCCTCTACCTAGGACTTGGAACCCTCTCCTTCTTCCTTGTTATGAAC CAAATTGATGGCAAGAAGACTAATGGAGTCCTTGATGCCCTTTACTTGTGTGTTGTCACAATGACCACCGTTGGATATGGTGACTTAGTCCCTAACACCT TCCTATCGAAGCTCCTTGCTTGTGTGTATGTCTTCACAGGGATGGCTGTTGGTGGGATTGTTCTGAGCAAAGCAGCTGATCACATTGTGGAAAGACAGGA GATTGTTCTGGTTAAGGCCTTCCATTTACACGATAAGAAGATGGGCGCTAGCGAGATCATGAAAGAGGTTGAAACTCATAAGCTTCAGTACAAATTGCTG TTTTCAGCAGCACTTATGGTAGTGCTAATGGTTTTGGGGACAATGGTGTTGTGTTTCATTGAAAGTATGGGTTTCATGGATGCGTTCTATTGTGTGTGCT CTACGGTAACTACTCTTGGTTATGGAGATGCGAGCTTCTCAACTTGGGGAGGAAGATTGTTTGCCGTGTTCTGGATATTGAGCAGCACCATTTGCTTGGC TCAATTGTTTCTCTACTTGGCCGAGTGGTACATAGACAAGAGGAAAAGGTCGCTTGTTGAATTGATACTTGCAAGAAAGGTGACATCCTCGGATCTTGAG GCTGCTGATGTTGATCATGACAATGTCGTCAGCCCTTCCGAGTTTGTTGTTTTCACATTGAAGGAAATGGGGAAGATCAATGATGAAGACATTGCTTTGG CAATGGAGAGACTCAGAAACCTTGATGTTGATCGTTCTGGCACCTTGACTGCAGCTGATTTTGTCTCACCTTAG
AA sequence Show only first row Show all	>Lus10001912 pacid=23157111 polypeptide=Lus10001912 locus=Lus10001912.g ID=Lus10001912.BGIv1.0 annot-version=v1.0 MASNDNDATRSLLSDANDSPTNATERNATFQRRKSKQAVNHKFDDSGNTPHEENVKHNNGSGNQWIDSLLGVQTLRFNIVFILLFLYLGLGTLSFFLVMN QIDGKKTNGVLDALYLCVVTMTTVGYGDLVPNTFLSKLLACVYVFTGMAVGGIVLSKAADHIVERQEIVLVKAFHLHDKKMGASEIMKEVETHKLQYKLL FSAALMVVLMVLGTMVLCFIESMGFMDAFYCVCSTVTTLGYGDASFSTWGGRLFAVFWILSSTICLAQLFLYLAEWYIDKRKRSLVELILARKVTSSDLE AADVDHDNVVSPSEFVVFTLKEMGKINDEDIALAMERLRNLDVDRSGTLTAADFVSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10001912 [exp]	0	1
AT5G63220			unknown protein		Lus10036505 [exp]	2.8	0.9026
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	3.9	0.8950
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	7.2	0.9065
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	9.8	0.8812
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	10.8	0.8846
					Lus10022643 [exp]	11.6	0.8628
AT3G05390			unknown protein		Lus10004494 [exp]	12.0	0.8915
AT5G03345			unknown protein		Lus10026529 [exp]	12.2	0.8832
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	12.4	0.8854
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	14.4	0.8697

Compare expression of checked genes

Lus10001912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.