Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16380 69 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G49420 57 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G51090 49 / 3e-07 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000039 [exp] 104 / 2e-27 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039073 [exp] 80 / 4e-18 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10038786 [exp] 80 / 8e-18 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019200 [exp] 65 / 2e-12 AT4G16380 86 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019300 [exp] 65 / 4e-12 AT4G16380 94 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018400 [exp] 63 / 8e-12 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018901 [exp] 62 / 1e-11 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019100 [exp] 63 / 2e-11 AT4G16380 59 / 8e-10 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019500 [exp] 58 / 3e-10 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019400 [exp] 57 / 9e-10 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G006700 [exp] 56 / 2e-09 AT4G16380 45 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018766 [exp] 56 / 2e-09 AT4G16380 53 / 8e-09 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019800 [exp] 56 / 3e-09 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001913 pacid=23157116 polypeptide=Lus10001913 locus=Lus10001913.g ID=Lus10001913.BGIv1.0 annot-version=v1.0 ATGCCACAAGAAGATAAAGAAAGTCCTCTGCGGAATCCCTCGTACTCATCGGAATCCATCGCACACAATAATATCAATCTTTCGTTCTGTGTTTCTGTCA CTGATCATGAGCAGTACTTTGTTTGGTGTACAGTGAAAAGTTCATTCGCCATTTTTGTTAATTTTATTATTTGCCTGCCTGGAACAACAGAAATCCAGAA TCAAGTGTTCGACGAGAAGGCGAATCTGGTGTTAATCACGGTACTCTGCTGCAGTCCGGAGAAGGTAATGGACAAGATTTGCTGCAAAGGCGGGGAATCG GTCAAGGGAATCGAGATCGTCAAACCTCCGCCACCGAAGCCCAAAGAACCTGAAAAGCCCAAGGAGAAACCAAAGGAGCCGACGGAGAAGCCTAAAGATC CCGAAAAGCCCAAGCTGGTTCCAGTCCCAGAGAAACCAAAGGATAAGCCGCCGCCGCTGAAAACGGTCTCATTCGCTGAGCCCGAGCCGGAGAAACCCAA ACAGCCCGATCCTGCTCCGAAGCCTCTTCCTGCCCCGGCACCTCTACCCGGTCTTCCGCCTCCAGGAGGGTTTCAGATTCAGTCCTGCTGTAGGGAATGC TACGGAGGGTGTGGGGTGGGCCCGTGTTACAGCATGCTACCGGCGCCACCGTGCTACCAAGGGTACGGAAGACCCGTGTACGACAGCTGGGGAGGCGGTG GAGGATACTACAGAGGAGGAGGCTATTGCGTCACTAGAGGGGAGTGCTTTAGCGACGAGAATCCATCAGGTTGCGTCGTCATGTGA
AA sequence Show only first row Show all	>Lus10001913 pacid=23157116 polypeptide=Lus10001913 locus=Lus10001913.g ID=Lus10001913.BGIv1.0 annot-version=v1.0 MPQEDKESPLRNPSYSSESIAHNNINLSFCVSVTDHEQYFVWCTVKSSFAIFVNFIICLPGTTEIQNQVFDEKANLVLITVLCCSPEKVMDKICCKGGES VKGIEIVKPPPPKPKEPEKPKEKPKEPTEKPKDPEKPKLVPVPEKPKDKPPPLKTVSFAEPEPEKPKQPDPAPKPLPAPAPLPGLPPPGGFQIQSCCREC YGGCGVGPCYSMLPAPPCYQGYGRPVYDSWGGGGGYYRGGGYCVTRGECFSDENPSGCVVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16380			Heavy metal transport/detoxifi...		Lus10001913 [exp]	0	1
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10014593 [exp]	1.4	0.8320
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	3.2	0.8467
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	8.7	0.7973
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	9.5	0.7938
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	18.1	0.8177
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	18.3	0.7917
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	19.6	0.7770
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	20.8	0.8027
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	21.0	0.7820
AT1G20180			Protein of unknown function (D...		Lus10005612 [exp]	23.1	0.7181

Compare expression of checked genes

Lus10001913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.