Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47670 201 / 2e-64 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 176 / 5e-55 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT2G38880 153 / 5e-47 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT4G14540 153 / 8e-47 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 150 / 2e-45 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT3G53340 148 / 1e-44 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G37060 147 / 1e-44 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT2G13570 143 / 3e-42 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT2G47810 137 / 1e-40 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT1G09030 119 / 5e-34 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003909 [exp] 369 / 1e-130 AT5G47670 221 / 1e-72 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10008981 [exp] 178 / 1e-54 AT5G47670 193 / 5e-61 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10028845 [exp] 176 / 2e-54 AT5G47670 188 / 6e-60 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10008980 [exp] 161 / 2e-48 AT5G47670 168 / 6e-52 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10022514 [exp] 154 / 1e-46 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 154 / 1e-46 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001751 [exp] 152 / 8e-46 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 151 / 2e-45 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10015058 [exp] 147 / 2e-44 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005600 [exp] 202 / 5e-65 AT5G47670 216 / 6e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.006G005000 [exp] 199 / 4e-64 AT5G47670 216 / 7e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.016G006100 [exp] 157 / 5e-48 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 154 / 6e-47 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G085000 [exp] 153 / 1e-46 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.008G044800 [exp] 151 / 6e-46 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.014G167800 [exp] 151 / 8e-46 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.010G216600 [exp] 150 / 2e-45 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.001G367500 [exp] 148 / 7e-45 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G132600 [exp] 142 / 1e-42 AT2G47810 186 / 9e-61 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10001914 pacid=23157105 polypeptide=Lus10001914 locus=Lus10001914.g ID=Lus10001914.BGIv1.0 annot-version=v1.0 ATGGCGGAACATGCAGCAACAGTCGCTGGTGGCTTTCATGGCTATCGGAGCAGCAGCACTAGGCCCAGGCCTTCCTCCCCAACTGCAACAGCTACAGGGA AGTTGCCGGCAGGGAGGGTGCAAGCGGAGGCCAACAACAACACTAACATGAATATGAGCAAGTCAATTGAGGCGGAGGAGTGCACGGTGAGGGAGCAAGA TCGGTTCATGCCCATCGCGAATGTGATAAGGATAATGAGGAAGATACTGCCTCCGCACGCTAAGATATCCGACGACGCCAAGGAGACGATACAGGAATGC GTGTCAGAGTACATAAGCTTTATAACCAGTGAGGCCAATGAGCGTTGTCAGCGTGAGCAGCGCAAAACCATTACCGCAGAGGATATTCTCTTTGCCATGA GCAAGCTTGGTTTTGACGACTACATCGAGCCACTCACCCTTTACCTCCACCGTTTTCGTGATCTTGAAGGAGCAGCTGCATCCTCCTCCAGTAGTACTGT GCGCGTGGCTGATCAGCACCTGCGCTCTCTCAAGAGGAACACCATTAATGGTGGTCTCATGCTCGACTATTTGGCCTCTAATTCCTCCGGCTCATTTCAT CACCACCACCACCATGGTGTTGGTGGGCTTTATGGAGCTAGTGAGTCCCATATTTCCAACCGTATGCCACGCGGTAATGGCACCAGTAGTAACGGGAACC ATGACCATCCAAATTTTGGTCACCAGCAGCAGCATAAGTGA
AA sequence Show only first row Show all	>Lus10001914 pacid=23157105 polypeptide=Lus10001914 locus=Lus10001914.g ID=Lus10001914.BGIv1.0 annot-version=v1.0 MAEHAATVAGGFHGYRSSSTRPRPSSPTATATGKLPAGRVQAEANNNTNMNMSKSIEAEECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQEC VSEYISFITSEANERCQREQRKTITAEDILFAMSKLGFDDYIEPLTLYLHRFRDLEGAAASSSSSTVRVADQHLRSLKRNTINGGLMLDYLASNSSGSFH HHHHHGVGGLYGASESHISNRMPRGNGTSSNGNHDHPNFGHQQQHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	0	1
					Lus10020641 [exp]	1.0	0.9921
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	1.4	0.9890
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	3.2	0.9682
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	3.5	0.9744
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	3.5	0.9760
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	4.6	0.9626
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	6.0	0.9673
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	6.3	0.9621
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	7.1	0.9607
AT5G45650			subtilase family protein (.1)		Lus10002780 [exp]	8.7	0.9506

Compare expression of checked genes

Lus10001914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.