Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47790 376 / 6e-129 FHA SMAD/FHA domain-containing protein (.1) AT5G38840 92 / 8e-20 FHA SMAD/FHA domain-containing protein (.1) AT1G34355 53 / 3e-07 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) AT3G20550 52 / 4e-07 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003911 [exp] 726 / 0 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10005098 [exp] 89 / 1e-18 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 81 / 5e-16 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10004278 [exp] 52 / 3e-07 AT3G20550 320 / 2e-108 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10009434 [exp] 53 / 4e-07 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10006070 [exp] 52 / 8e-07 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10019235 [exp] 43 / 0.0003 AT3G20550 296 / 5e-99 DAWDLE, SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003100 [exp] 428 / 3e-148 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 426 / 2e-147 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1) Potri.004G111500 [exp] 89 / 8e-19 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.013G114700 [exp] 54 / 1e-07 AT1G34355 299 / 5e-84 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Potri.001G420400 [exp] 51 / 7e-07 AT3G20550 298 / 4e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.011G136102 [exp] 48 / 7e-06 AT3G20550 226 / 8e-73 DAWDLE, SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10001916 pacid=23157120 polypeptide=Lus10001916 locus=Lus10001916.g ID=Lus10001916.BGIv1.0 annot-version=v1.0 ATGCTGAAACCTTTGAGCCATCCTCTGGTTTCTCTAGAACCATTGCTCAATCTCAAAGTTCAGACCTTTGAGCCATCCTCTGGTTTCTCTAGAACCATTG CTCGATCTCAAAGTGTTGTTAAAGATTCTTCAGTTCTCAATGTTATTCCAGAGCCTTTTTTGCCGGAGGCAGGGCCCCTGTTGGGTCTGGCTCAGCAGCT TACCCAGGTTGGAGGTGGCCAATCAACTTGGCAACCACCAGACTGGGGTATTGAACCTCGATCAGGTGTTTATCGTCTTGAAGTCATGAAAGATGGTGAA GTTATTGATCGGATTAATCTCGATAAGAGAAGACACATATTTGGGAGGCAATCTAATAACTGTGATTTTGTGCTTGATCATCAGTCCGTATCTCGTCAAC ACGCTGCTGTTGTCCCTCACAAAAGTGGAAGCATCTATGTGATTGATTTGGGGTCCGCACATGGTACTTTCGTTGCAAATGAGAGATTAGCCAAAGACAC ACCTGTTGAGCTTGAGGTAGGGCAATCTTTGCGGTTTGCTGCTTCAACAAGATCCTATATATTAAGAAAGAACGATGCAGCTTTATTTCCGAGTCTTCCA CCTTCAACGGAGATTATTTTGCCATCTTCTCCGGATCAGAATAATGAAGAAGCTGTTGTGTACTATAATACCCAGATAAACCGTTACGGTGTGGACAAGC TTGCTAAGGTCTTAGACTTTAGACCTAGCAGTCATTTAGTTAGAAAACAAACTACCCAGCAGATCAAGAGAGCTGCAAAGAGAATTAAGAAAGCAAGAGT TGTGTTCAAAGATCAGGTTGGTGGTGAGCTGGTTGAAGTTGTTGGTATTTCAGATGGTGTAGATGTAGGGACAGAGACTGGACCGGTTGATGTTAAAGAA GGTAGTCTCATTGGGAGATACGAATCTCTTGTACAAAGTGTGGTGATACCCAAAGGCAAGGAAGCGTCACCACTCAAGGAACGTAGTGGTTTGCAGCAAG GTGTGACCAACAGACTGCAAGAAGTCTTGACGAAGGTGAAGGCACCTCCAACTCAAGCGAAGGGATTGTATGATAGCCTTTATGATGAATCATTGTCCGG CAAATTGGGTTCGTCTTGGGCGACTCCTGCCATGAAATCAGGAGGAAGACCTTCTCCAACTAAAGCTGCTGTCCAAGGGAAGGGCGGCAGTGGTTCAAGC ATAGACGATGAAAATAAGTTGAGCTTGGAGGACTACGACGATGATGATGATTTATTTGGAGACTGA
AA sequence Show only first row Show all	>Lus10001916 pacid=23157120 polypeptide=Lus10001916 locus=Lus10001916.g ID=Lus10001916.BGIv1.0 annot-version=v1.0 MLKPLSHPLVSLEPLLNLKVQTFEPSSGFSRTIARSQSVVKDSSVLNVIPEPFLPEAGPLLGLAQQLTQVGGGQSTWQPPDWGIEPRSGVYRLEVMKDGE VIDRINLDKRRHIFGRQSNNCDFVLDHQSVSRQHAAVVPHKSGSIYVIDLGSAHGTFVANERLAKDTPVELEVGQSLRFAASTRSYILRKNDAALFPSLP PSTEIILPSSPDQNNEEAVVYYNTQINRYGVDKLAKVLDFRPSSHLVRKQTTQQIKRAAKRIKKARVVFKDQVGGELVEVVGISDGVDVGTETGPVDVKE GSLIGRYESLVQSVVIPKGKEASPLKERSGLQQGVTNRLQEVLTKVKAPPTQAKGLYDSLYDESLSGKLGSSWATPAMKSGGRPSPTKAAVQGKGGSGSS IDDENKLSLEDYDDDDDLFGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10001916 [exp]	0	1
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	2.0	0.9285
AT2G32760			unknown protein		Lus10016662 [exp]	2.0	0.9351
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	4.6	0.9246
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	9.7	0.9133
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	11.5	0.9130
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	12.0	0.9097
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10026704 [exp]	13.0	0.9036
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	13.3	0.9139
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	13.4	0.8738
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042919 [exp]	14.1	0.9088

Compare expression of checked genes

Lus10001916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.