Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25310 481 / 4e-167 Exostosin family protein (.1) AT5G03795 434 / 5e-148 Exostosin family protein (.1) AT3G07620 405 / 2e-137 Exostosin family protein (.1) AT5G11130 375 / 2e-125 Exostosin family protein (.1) AT3G42180 372 / 1e-124 Exostosin family protein (.1.3) AT5G33290 372 / 4e-124 XGD1 xylogalacturonan deficient 1 (.1) AT5G20260 366 / 3e-122 Exostosin family protein (.1) AT4G16745 325 / 4e-105 Exostosin family protein (.1.2) AT4G32790 323 / 5e-104 Exostosin family protein (.1) AT5G19670 309 / 3e-98 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001958 [exp] 570 / 0 AT5G25310 372 / 1e-127 Exostosin family protein (.1) Lus10039142 [exp] 453 / 8e-155 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 449 / 6e-153 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 444 / 2e-152 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10008751 [exp] 444 / 1e-151 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 421 / 2e-145 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10005186 [exp] 399 / 6e-135 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10027707 [exp] 389 / 7e-131 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10039980 [exp] 372 / 7e-123 AT5G20260 489 / 2e-169 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025400 [exp] 564 / 0 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.014G171100 [exp] 437 / 4e-149 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 434 / 7e-148 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 421 / 2e-143 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 404 / 7e-137 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 391 / 3e-131 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 391 / 3e-131 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064800 [exp] 390 / 7e-131 AT5G20260 556 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 386 / 6e-130 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 385 / 1e-129 AT3G42180 524 / 0.0 Exostosin family protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10001917 pacid=23175284 polypeptide=Lus10001917 locus=Lus10001917.g ID=Lus10001917.BGIv1.0 annot-version=v1.0 ATGGAGCTCAAACGCCAGAAGTTCACCTCCCTATTCTCTCCATCGCTTTCTTCCTCCACCTCTTTTCTTTTATTCATCTCGGTTCTGATCGCCTCCGCTT ATTACTTCTGCTCTTACGAGGGTCGATTGCTTCGCCGCCTTGCTACAGAGTCTCATTTTGAATCGTCCGGCGGCGGCGACACCACCACCGGGAGTTCTAA TGTTTTCCCCGCCGTAGAGCTTCACACTAAGATCGTCAGCTCTAATCAAATCCAAGCGGTCCGCCCATCAGCTCCCCCCTCTGTTGGCAATGGCTCATTC ACGACGAACACCACGAGTAGTAGTTCCGTTGCCCAACAGAGGAAACGCGCAGCAAAGACGATCAGCAGAGAAGAAGAGCTGGAGCGAGGACTGGCTAGAG CTCGAGCTTCAATCCGCAGAGCAGCAATGGCGACGGATCAAAACTCATCGATGATGATTGGGAGGAGCAACGGCATTAATTTTACTAGCGGAAGCGTTTA TCGTAATCCCAGAGCATTTCACCGGAGTTATATGGAGATGGAGAAGAGATTCAAGGTATACGTGTACAAGGAAGGGGAGCCACCGATAGTCCATGACGGA CCGTGCAAGGACATATACACGGTGGAAGGGAGGTTCATACACGAGCTGGAACACGGATCGAGCGGCCGTAAGTTGAAGACGGAACACCCATGGAGAGCCC ATGCATACTTCATGCCTTTCAGCGTAACGTGGATGGTCAAGTATCTCTACACCCCACTCTCTTACGATCTCGCGCCTCTCCGGCGCTTTGTGGCTGACTA CGTGACCGTCATCTCATCCAAGTACCCCTTCTGGAACCGGACTCTCGGCGCTGACCATTTCATGCTTGCTTGCCACGATTGGGGTCCCCATGCATCAAGA GGCAACCAACTAGTCCACGACAAGTCAATCAGAGTCCTCTGCAACGCCAACACCTCCGAAGGATTCAACCCAAGAAAAGACGTCAGCCTACCCGAAATCC ACCTCTACGGCGGAAACATACCCACAGAGCTTCTCCTCTCTCCTCCACCCAACTCCCACCGCCGTTCTTACCTCGGGTTCTTCGCCGGCGGCCTCCACGG TCCAATCCGGCCAATCCTAATCAACCACTGGCGAAACCGAAACGACCCACAACTCAAAGTCTTCGAGTACCTACCCAAGAACCAGAGCTACTACTCCTTC ATGCTGAAATCAAAATTCTGCCTCTGCCCAAGCGGTCACGAGGTCGCCAGTCCGAGAATCGTGGAGGCCATCTACGCCGAGTGCGTCCCCGTCATCCTGT CGGAGAACTACGTGCTCCCTTTCAGCGACGTGCTGAGGTGGCAGGCTTTTTCAGTGACAGTCGACGTGGTGGAGATTCCGATGCTGAAAGAGATTCTTGG TGGGGTTTCCGAGGAGGAATATTTGAGGCTTAAGAAAGGGGTTCGTGCTGTGAGGAAGCATTTTGTGTTGAACCAGCCGGCGAAGAGATTTGATGTTTTT CATATGATTTTGCACTCCGTTTGGCTGAGGAGACTCGACATCAAACTTTAA
AA sequence Show only first row Show all	>Lus10001917 pacid=23175284 polypeptide=Lus10001917 locus=Lus10001917.g ID=Lus10001917.BGIv1.0 annot-version=v1.0 MELKRQKFTSLFSPSLSSSTSFLLFISVLIASAYYFCSYEGRLLRRLATESHFESSGGGDTTTGSSNVFPAVELHTKIVSSNQIQAVRPSAPPSVGNGSF TTNTTSSSSVAQQRKRAAKTISREEELERGLARARASIRRAAMATDQNSSMMIGRSNGINFTSGSVYRNPRAFHRSYMEMEKRFKVYVYKEGEPPIVHDG PCKDIYTVEGRFIHELEHGSSGRKLKTEHPWRAHAYFMPFSVTWMVKYLYTPLSYDLAPLRRFVADYVTVISSKYPFWNRTLGADHFMLACHDWGPHASR GNQLVHDKSIRVLCNANTSEGFNPRKDVSLPEIHLYGGNIPTELLLSPPPNSHRRSYLGFFAGGLHGPIRPILINHWRNRNDPQLKVFEYLPKNQSYYSF MLKSKFCLCPSGHEVASPRIVEAIYAECVPVILSENYVLPFSDVLRWQAFSVTVDVVEIPMLKEILGGVSEEEYLRLKKGVRAVRKHFVLNQPAKRFDVF HMILHSVWLRRLDIKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25310			Exostosin family protein (.1)		Lus10001917 [exp]	0	1
AT5G11630			unknown protein		Lus10011623 [exp]	4.6	0.6851
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	4.7	0.7896
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002275 [exp]	9.8	0.7036
					Lus10028091 [exp]	11.0	0.6710
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	14.1	0.6944
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	14.3	0.7105
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	17.7	0.6990
					Lus10022109 [exp]	22.5	0.6675
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	26.5	0.6666
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	26.6	0.6705

Compare expression of checked genes

Lus10001917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.