Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25310 241 / 1e-81 Protein of unknown function (DUF2012) (.1) AT4G32130 238 / 3e-80 Protein of unknown function (DUF2012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001955 [exp] 342 / 1e-121 AT2G25310 261 / 1e-89 Protein of unknown function (DUF2012) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257100 [exp] 261 / 2e-89 AT2G25310 253 / 4e-86 Protein of unknown function (DUF2012) (.1) Potri.018G024600 [exp] 257 / 7e-88 AT2G25310 250 / 6e-85 Protein of unknown function (DUF2012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF09430 [flax] [poplar] DUF2012 Protein of unknown function (DUF2012)
Representative CDS sequence Show only first row Show all	>Lus10001919 pacid=23175286 polypeptide=Lus10001919 locus=Lus10001919.g ID=Lus10001919.BGIv1.0 annot-version=v1.0 ATGGCGTTGATTGCAAGATTTAGGCCATCTGTTCTTCTACTGTTGCTGCAAATCTGCCTATTGGTTCTCTCTCCAGCTCGCGCGATCTCGTCCGGGTCTG GTGATGGCTACACCATCAATGGCCGAATTAAAATTCCAGTAGCAAAAGGATATGGTATTCTTGGTAAAACATCAAATGTCAAAGTGATTCTGAATGGTGG CCAAAATGTTACCTTCTTAAGGCCTGATGGATACTTCTCATTCCATAATGTTCCAGCTGGAACACATTTAATTGAAGTGTCTGCAATGGGCTATTTCTTT TCTCCAGTCAGAGTTGATGTTAGTGCCAGGTTTCCAGGCAAGATTCAAGCAGCATTAACAGAGAATAGAAGAGGCCTGACTGAGCTGGTGTTGGAGCCAC TAAGGGAGGAACAGTACTACGAGATTAGAGAACCCTTCTCCCCTATGTCAATTGTCAAGAGCCCCATGGGGATGATGATAGGATTTATGGTGGTCGTCGT GTTCTTGATGCCCAAATTGATGGAGAACATGGATCCTGAAGAAATGAAGCGAGCACAAGAAGAAATGCCGTCTCTGGCGAAGTTCTTGCAACCAGCTGCT AGAAGCTAG
AA sequence Show only first row Show all	>Lus10001919 pacid=23175286 polypeptide=Lus10001919 locus=Lus10001919.g ID=Lus10001919.BGIv1.0 annot-version=v1.0 MALIARFRPSVLLLLLQICLLVLSPARAISSGSGDGYTINGRIKIPVAKGYGILGKTSNVKVILNGGQNVTFLRPDGYFSFHNVPAGTHLIEVSAMGYFF SPVRVDVSARFPGKIQAALTENRRGLTELVLEPLREEQYYEIREPFSPMSIVKSPMGMMIGFMVVVVFLMPKLMENMDPEEMKRAQEEMPSLAKFLQPAA RS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25310			Protein of unknown function (D...		Lus10001919 [exp]	0	1
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10013897 [exp]	4.7	0.8674
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	9.1	0.8547
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10021797 [exp]	10.6	0.8006
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10043301 [exp]	15.6	0.8259
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10037699 [exp]	19.5	0.8249
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	20.1	0.8005
AT1G36980			unknown protein		Lus10035779 [exp]	22.3	0.8196
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10029651 [exp]	23.0	0.7917
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	24.0	0.8527
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	25.0	0.7715

Compare expression of checked genes

Lus10001919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.