Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32120 478 / 2e-169 Galactosyltransferase family protein (.1) AT2G25300 447 / 1e-157 Galactosyltransferase family protein (.1) AT5G53340 244 / 4e-78 Galactosyltransferase family protein (.1.2) AT1G05170 202 / 4e-61 Galactosyltransferase family protein (.1.2) AT2G32430 196 / 1e-58 Galactosyltransferase family protein (.1) AT1G33430 194 / 5e-58 Galactosyltransferase family protein (.1.2) AT1G11730 192 / 2e-57 Galactosyltransferase family protein (.1) AT1G32930 191 / 1e-56 Galactosyltransferase family protein (.1) AT1G77810 190 / 2e-56 Galactosyltransferase family protein (.1.2) AT4G26940 182 / 2e-53 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001954 [exp] 498 / 1e-174 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1) Lus10014945 [exp] 261 / 1e-84 AT5G53340 469 / 4e-167 Galactosyltransferase family protein (.1.2) Lus10032350 [exp] 256 / 3e-82 AT5G53340 419 / 5e-147 Galactosyltransferase family protein (.1.2) Lus10033935 [exp] 254 / 1e-81 AT5G53340 415 / 6e-146 Galactosyltransferase family protein (.1.2) Lus10038830 [exp] 224 / 1e-69 AT5G53340 421 / 4e-148 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 199 / 2e-59 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 195 / 3e-58 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 194 / 6e-58 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 192 / 4e-57 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257200 [exp] 496 / 1e-176 AT4G32120 556 / 0.0 Galactosyltransferase family protein (.1) Potri.018G024500 [exp] 474 / 5e-168 AT4G32120 538 / 0.0 Galactosyltransferase family protein (.1) Potri.003G136000 [exp] 293 / 5e-97 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2) Potri.015G023700 [exp] 265 / 4e-86 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 199 / 8e-60 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 198 / 2e-59 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 197 / 4e-59 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 196 / 1e-58 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 194 / 5e-58 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.005G171400 [exp] 191 / 1e-56 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10001920 pacid=23175282 polypeptide=Lus10001920 locus=Lus10001920.g ID=Lus10001920.BGIv1.0 annot-version=v1.0 ATGGACACCTTGCCGACGACGTCAAAATCTGACCGGCGATGGAGATCGAAGAATCTTCAGACTTCCAAACCGTCTCTCGTGATGGCCTTTTTCTCTTGCC TCGCTTGGCTCTACGTTGCTGGACGGTCAGTACCTCCTTCATTCCTTGCTCCGAGGTTGATTACTGTGTTGAATTGTGGCATTGGCGCAAATAGGGAGTG GTTGTGGCAAGACGCGGAGAATAGAACGTTGCTCACCAATCTGCTTAAGACGAACTCTGCACAGAGACCCAAGGTGCTTTCAGTGGATGATAAGCTAGCT GTTCTTGGATGCAAAGACCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGACATTGGCCAAAAGTCAAGGATATCTCAAGAACCAGTTGCCACAGT CCAAGTCAGCTTCTGGCCAAAAGCTTCTAGCAGTTATTGGAGTATACACTGGATTCGGTAGCCGCCTCAGCAGGAATTACTTTCGAGGCTCTTGGATGCC AAGAGGTGATGATGCTTTGAAGAAACTGGAAGAAAGAGGAATAGTAATTAGATTCGTCATTGGTCGGAGTGCTAATCGAGGTGATAGCTTAGATCGGAAC ATTGATGAGGAGAATCGCACGACAAAGGATTTCTTAATTCTTGAAGGTCACGAGGAGGCTGAGGAAGAGCTGCCGAAAAAAGCCAAGTTTTTCTACAGTA CTGCAGTGCAGAACTGGGACGCAGAGTTTTATGTCAAAGTTGATGACCAAATCAACCTTGATCTTGATGGGTTAATTGGACTCCTTGAACGCCGTCGTGA CCAAGACAACGCTTATATTGGATGCATGAAGTCGGGAGATGTCGTAACTGAAGAAGGAAAACAATGGTACGAGCCTGACTGGTGGAAATTTGGGGATGAG AAATCGTACTTCCGGCATGCAGCTGGTCCACTTATTATACTCTCCAAAAATTTGGCTCAATACATTAACATTAACAGTGCGTCTCTGAAGACCTATGCTT ATGACGATACATCGATCGGATCTTGGATGATGGGTATCCAAGCAACGTACATAGATGACAACCGTCTGTGCTGCTCTAGCATAAAGCAAGGTCTGTTCCC TGGCTTGATTGGAGGAGGGACATGGATTCTCGTTCCGTCTGGGGAAAAAGTTATTGACAAACTTGATCAGTCCTTGTATTCATTGCATCCACCACCTCCA GTTTAG
AA sequence Show only first row Show all	>Lus10001920 pacid=23175282 polypeptide=Lus10001920 locus=Lus10001920.g ID=Lus10001920.BGIv1.0 annot-version=v1.0 MDTLPTTSKSDRRWRSKNLQTSKPSLVMAFFSCLAWLYVAGRSVPPSFLAPRLITVLNCGIGANREWLWQDAENRTLLTNLLKTNSAQRPKVLSVDDKLA VLGCKDLERRIVEAEMELTLAKSQGYLKNQLPQSKSASGQKLLAVIGVYTGFGSRLSRNYFRGSWMPRGDDALKKLEERGIVIRFVIGRSANRGDSLDRN IDEENRTTKDFLILEGHEEAEEELPKKAKFFYSTAVQNWDAEFYVKVDDQINLDLDGLIGLLERRRDQDNAYIGCMKSGDVVTEEGKQWYEPDWWKFGDE KSYFRHAAGPLIILSKNLAQYININSASLKTYAYDDTSIGSWMMGIQATYIDDNRLCCSSIKQGLFPGLIGGGTWILVPSGEKVIDKLDQSLYSLHPPPP V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	0	1
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	3.2	0.8636
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	3.6	0.8979
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	4.2	0.8762
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	4.2	0.8256
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	7.5	0.8694
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	8.4	0.8858
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	8.5	0.8329
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	8.5	0.8619
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	8.9	0.8349
AT4G19420			Pectinacetylesterase family pr...		Lus10034767 [exp]	9.2	0.8141

Compare expression of checked genes

Lus10001920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.