Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31170 797 / 0 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT5G38830 522 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT3G56300 459 / 4e-157 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT1G09620 44 / 0.0003 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041428 [exp] 561 / 0 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10034343 [exp] 555 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10021862 [exp] 555 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10010336 [exp] 551 / 0 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10001953 [exp] 362 / 2e-121 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001954 [exp] 296 / 6e-93 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024300 [exp] 829 / 0 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.010G122500 [exp] 593 / 0 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.003G003900 [exp] 43 / 0.0008 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.008G122901 [exp] 0 / 1 AT5G38830 0 / 1 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01406 [flax] [poplar] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10001921 pacid=23175273 polypeptide=Lus10001921 locus=Lus10001921.g ID=Lus10001921.BGIv1.0 annot-version=v1.0 ATGGGCACGCTGTTCAAGTGCCACAAACCAGTCTTCTCCTCTATCCGATTCATCTCCACACTCTCCAGTTCCCCGTTCCGTTATGTTCATACCAGAACTC GTCCTCCTCGGACCGCTCCGGTCACCGGAAAGAGAAGGCAATTGTTTCAGCTCTTCACCTCTCTCACCTCATCCCATCCGGTAACCAACGGCAAGAGCTG CGGCAAAACCGCCGCCAGTCCTCAACCGGAGCTGTGGCTGCACAACACGATGACGAGGAAGAAGGAGCTGTTCAAATCGAAATCGGAAGGCAAAGTTGGA ATGTACGTCTGCGGTGTTACGGCGTACGATCTTAGCCATATCGGCCATGCTCGGGTTTATGTCACCTTCGATGTGCTCAACAGGTCATCGATGGCTGCCG CTGTTTGTTTCACTATGTCTAACTGGTATCTTAGGCATTTGGGATACGATGTCTGCTATGTTCGAAATTTCACGGATGTTGATGATAAGATAATTAAACG AGCAATTGAACTGGGAGAGGAGCCGATCAGCTTAAGTAGACGATACTGTGAAGAATTTCACCAGGATATGGTGTCACTGCAATGTCTGCCTCCTTCGGTC GAGCCACGTGTATCAGATCACATCCCTCATATCATTGACATGATAAACAAGATTCTTGAAAATGGATGTGCCTACAGAGTTGACGGAGATGTCTATTTCT CTGTCGACAAGTTCCCAGACTACGGGAAATTATCTGGAAGAAAACTAGAAGATAATCGCGCTGGCGAGCGGGTCACTGTTGACACAAGAAAAAAGAATCC TGCTGATTTTGCTTTGTGGAAGTCTGCAAAGGAGGGTGAACCGTCGTGGCAGAGTCCCTGGGGCCCTGGAAGACCTGGATGGCATATTGAGTGCAGTGCA ATGAGTGCTGCCTACCTTGGTCATTCCTTTGATATACACGGTGGAGGAATGGATCTTGTGTTTCCTCATCATGAAAATGAGATTGCACAGAGTTGTGCTG CTTGTAGAGATAGTAATATAAGCTATTGGGTGCACAATGGGTTTGTTACAATTGATTCAGAGAAAATGTCGAAATCTCTCGGAAACTTCTTCACCATCAG GCAGGTTATAGATCTATACCATCCGTTAGCAGTGAGGCTTTTCTTGTTGGGGACCCACTACAGATCTCCAATTAACTACTCTGATGCACTGCTAGAGAGT GCTTCCGACCGTCTCTTTTACATTTATCAGACATTATATGATTGCGAGGATGTTATCAGACAGAACGATGCAGGCTCTGTGGATAGTGCAATCCCTCCCG ATACAATGGACTGCATCGTTAAATTCAACGACGTGTTCACAGCCTCAATGTCTGATGATCTGCTCACGCCTGCAGTTTTAGCTGCTATATCTGACCCGTT GAAAATTATCAACGATATGTTGCATACACGCAAGCATGGTCGATGCCAGGGAAAGAAGCAACCAAAGCGAATAGAATCACTATCGGGACTACGGAAGATA ATTCAGAACGTTCTAACTGTCACGGGACTGATGCCGGAAACTTATTCGACGGCTCTTGAAGAGTTGAAGGAAAAGGCATTGAAGCGTGCGAAAATAACAG AAGACGTGATCATGCAAAAGATTGAGGAAAGGACTGATGCAAGGAAGATCAAAGATTATGAAAAGTCAGATGTCATTAGGAAAGAATTAGCTGCTGTGGG TATTGCTCTTATGGATAGTCCCGAAGGGACTACTTGGAGACCGGCTATCCCGCTTGCTTTGCAAGAGCAGACAATCGACACAACTTGA
AA sequence Show only first row Show all	>Lus10001921 pacid=23175273 polypeptide=Lus10001921 locus=Lus10001921.g ID=Lus10001921.BGIv1.0 annot-version=v1.0 MGTLFKCHKPVFSSIRFISTLSSSPFRYVHTRTRPPRTAPVTGKRRQLFQLFTSLTSSHPVTNGKSCGKTAASPQPELWLHNTMTRKKELFKSKSEGKVG MYVCGVTAYDLSHIGHARVYVTFDVLNRSSMAAAVCFTMSNWYLRHLGYDVCYVRNFTDVDDKIIKRAIELGEEPISLSRRYCEEFHQDMVSLQCLPPSV EPRVSDHIPHIIDMINKILENGCAYRVDGDVYFSVDKFPDYGKLSGRKLEDNRAGERVTVDTRKKNPADFALWKSAKEGEPSWQSPWGPGRPGWHIECSA MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACRDSNISYWVHNGFVTIDSEKMSKSLGNFFTIRQVIDLYHPLAVRLFLLGTHYRSPINYSDALLES ASDRLFYIYQTLYDCEDVIRQNDAGSVDSAIPPDTMDCIVKFNDVFTASMSDDLLTPAVLAAISDPLKIINDMLHTRKHGRCQGKKQPKRIESLSGLRKI IQNVLTVTGLMPETYSTALEELKEKALKRAKITEDVIMQKIEERTDARKIKDYEKSDVIRKELAAVGIALMDSPEGTTWRPAIPLALQEQTIDTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	0	1
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	2.0	0.9057
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	2.8	0.8925
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	3.0	0.9032
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	3.6	0.9140
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	4.9	0.8634
AT4G19450			Major facilitator superfamily ...		Lus10033271 [exp]	6.2	0.8287
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	7.4	0.8644
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10022321 [exp]	9.9	0.8666
AT4G24175			unknown protein		Lus10013559 [exp]	10.2	0.8761
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	11.4	0.8597

Compare expression of checked genes

Lus10001921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.